Gene detail

Detailed information of BRAKERNUSP00000005016.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029214023.2, uncharacterized protein LOC114977485 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000005016

atggATCGCAAGCAAGTCATTGCCTTGGTGTTATTAGATCTTTCCAAGGCATTTGACAGCATTGATCACATGTCCTTGTTAAAGAAGCTACATGCAATGGGTACCTCTATAGAAGTAATGGAATGGTTCAGAAGCTATTTCACCGGAAGAAAACAGGCGTTGAGAATTGGTTGCGAAGGATCAATCGTGGGCCAGGCACTGTTAAATATCTACATTAACGATCTACTATCTGTACCTAAGGTAGGATTGTTAGAGTGGGCATCCAATGAAGTTCCCAAGAAAATGAGTCTAACTGCAGATGAGCTGAAACTCAGAGCACAGCCTTTAACCAACTCagatttggaaataaaacaagGAAGGTGGTTTGGAGGATTTGATTCATTAGAAAATACATTGGTAAAGAACCAGCTTGTATTAAAGGAAGCCAAAACACCAAAGTATTCTCTAATGGAAAAAGGACAGCATTTAGGTGCTAGGTGTTCTGAATTTGATTATGCATTTCAAAATCTCTGTCAAGCATCTTCAGTTCCAACCATACCAGTTGTGAGACTCAGACCAGTTCTTGAAAATCGGCAAGTTTGCCTGCTTGTTGACAGCGAAGAGCCATTAAGAGAACGATTTGTAAGAGTGGCCGGACAGAAAGGACTTGCTGCTAAGACCAGAAAGCTGCCTGTTGGTGACTTCCTTTGGGTATTGCTGCCACCTGGAGCTAACCCTGATACTGCCAGGGATATACCTGACCAGGAACTGGTTCTTCCTATGGTTGTGGAAAGGAAAACTTGGGATGACCTATGGTCTAGCTTGAAAACTACAAGATTTGTTAACCAAGTTACAAGGATGAAGAGGTGTGGTTTGAAAAACCTTTTTTACTTGGTGGAGGGGAGTCCCAAGGAGCTAAAAGGAAACCCTGGTCCTGATGTTGAAAGTTACCTTCAGGACAAGATTGACACTCTTCTCTTGGttgaaaattttcttgttaaCCGTACAGGATCTTGGATGAAAACAGTAGAGTGGTTGTGTCATTTAACCAGTATGACCACTGAATTTCTTCAATCAGATGGTTGGTCAAATTTGATGACATTCAGTGAATTTTCACGTCGCAGCAGATCAAAAACAGGCTTTGAAACAGCAGGATACGTTGCTACAGCTGATTGTACTGTTTGGTCATCGTTGGAATTTACGGATTTTATACGAAGCCATAGTCGTGGTGGAAGGGAACTGCATGATCTTCCCGTTTGTGGAGCAGAGGAAAGATCTTTAATTGTTATACAAGGTCTTACTTTTTACAATAAGCAATGTCATAAATTGCTGGACAAAGCTCTTGCGGACCTCTTAGAAAATACGCATGAAAAGGCAGAAGCATGTGTTCAAAGAAAGCTACAGTGTGATACTGATCAACTGATTCACGAGGATGTTATGCAGTGGTATATTCTTTGGCTCCAGGTGTTTAAAGGAGTTATGGTGCGTAGAACAGAATCTGAGGAAGAGTCTGCAGACATTTTGTGCAAATTTTCTCAGAAATTCCCTGGTGAAGCAGTTGTTCCTCCACATAAACACTTTGAAGCTGGCGGTCTTAACAGAGAAGCAAGTGATCATTGGAAAAGATTGCCTGATGATGACTTAATATTTGCCAGCGATTCTCAAGAAGAAGATGCAATGATCCGCCAGGAGGTTTTTGATGTGCCCTGTGTTGAACCATCAAGCAGAACCAGCACAAAAACAGTACCACCCAGCAGCTCGCATGGCGGATCACATAAAATACCTTTGAGTGACATGAACGAGAGAGAACAGCTGGAGTTAGCCTTGGAACTCAGCAAAGTAGAAAACACCCCCAGTAAATCCCTCCAGCTTGGTTCATACCCTCATGCTAACCCTACATCTAACTTGGATATGGTTACGTCATCTCGCTCAGAAGTTTGCAGTACAAAAATAGAAGCTGGTGGTATAGATGATGAGCTAGAGAAAGCACTTAAATTGAGTCTTGAAGAGTTTAAGAGTGGAAAGCATACACAGAATTTTACACATAACCATGATGACACAGGTGACGACTTGGAGAGAGCCCTAAAGTTAAGTAAAATTGAATATGAACTTTCCAAGGAGAAATCTCGAGTTGTTGAAACATGTGACGGAGATACGGTAGTTCAGAGAGTGTTAAATTTAAGTAAGCTGGAAAGTGAAATGAAAGGAAGGGAAGGACGGTGTGATATCTCCATACCACCATTGGGCAATGCGGGGACAGCAGCAACACAGTCAAGCAAAGAAAGGCAAAACCGGAATATGGATACCTTATTTCCTTTTGAGGATGACATGGAAAGGGCCCTAAAATCCAGTAAATTGGAATATGAACAACAGGCGTCATTAAATAATAGAGGTCGAAATGGACAACTTGTTCCTACGGAGAAGGAACGGGGTGCACTAAATAGTGAAATTCAAGACTCTAATGAAGATGTAACAAAGAATGTGAGATTAAGCGGGGATAAAAGTTGGGACGGCAATGAACTTGAAAAGGTATTAGAGTTGAGTAGAATTGAACAATCTCACGAATGTAgtagtgtgaaaaaaaaagatgaacaCCTGGATCCTGATGTTACCTGTCTGGAAGACTGCGAAAGTACGTTGCTGCCAAGAGATCGAATTATTTCTCATCAAAAGCAAAGTATCTCGTCGCCCAATAATGACACTTACGTTCCTTCAAGTGTGTCATTTGATCAAGAATGGGATATTGAAAGTGGAAATTGTGATATTGGTGTTTTTGATGCTATAGATCCAACCACTATTGGCCGTTCTAAAGACTCTGCAATATTAATAGATTCCCAAGAACTCGTTGATGACAGTGCAAATGACTTCAATTATGCTCTGAAAGTGCAAGAAGAACTGAATAGGGAATTAAACAATGGTTCAAGTAATCCCCATGCCGATTTATCAACTACCATGGCCACAACTGGGACGGATATGAAAAAGCAACTTGCAGGCTATCGAGATTTGCAGAAAGAGAAATACAGACGCAAAGACAAGCCTTCACCTGGACTTGATTTTAGACGAAATGTGGCCGCCATTGCCTGTGGTAAACCAGTAAATACTTCCAAGAGCTGTAGCAGGGATGATGCGGAAGGTTGCAAATTTGCTGGTTTATCTTCTAAGAGCCCTCTCAAGAATAGTTGTGACAAGTCTAATGTGACTCACTCAGGAGCTGCTTCATCTACAAACGGGTCGTTTCCATCCAGGCAGGTTTTCTTCAGCCTTGAGAAACCGGTCCCTGGTTCATCTTCATCATCCCCCTCAAAATTCGGTAGAAGCGAGAGCGACAGACCTGTTGGCCCAAAGTGCGGTGCTTGTGGAGAAATAGGACACAACAAGAATTCAAAAATTTGTCCTCAGTACTTCTCTGCAGAAGCAGTTCAAAGACGAGAGGAACagtcaagaaaaagaaaagcaaagagggaggaagaagaaagagaattCAACGATCGTTTAGGGGCCATGGCTGCTCAGCGATTATCAGTTGAAGAACAGACAAGAATTTTAGGAGAGCAACTTGACCAACTACGAAGGCAGTCACAGAGCATGGCAGATACTCAGAAGAAGGTGGAAGATGCAATAAAgcgaagaaaaaaacattag

Transcript

BRAKERNUST00000005016

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008798 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732 all species →	ERCC4	ERCC4 domain	Domain	Interproscan
PF15288 all species →	zf-CCHC_6	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006166 all species →	Domain	ERCC4 domain	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR047417 all species →	Domain	MUS81, winged helix domain	Interproscan
IPR041670 all species →	Domain	Zinc knuckle	Interproscan
IPR047416 all species →	Domain	MUS81, XPF-like nuclease domain	Interproscan
IPR033309 all species →	Family	Crossover junction endonuclease Mus81	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13451 all species →	CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0006308 all species →	Biological Process	DNA catabolic process	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048257 all species →	Molecular Function	3'-flap endonuclease activity	Interproscan
GO:0048476 all species →	Cellular Component	Holliday junction resolvase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000005016.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.