Gene detail

Detailed information of BRAKERNUSP00000005086.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_044177789.1, protein lin-28-like isoform X2 [Acropora millepora]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P72366	Cold shock-like protein CspA OS=Stigmatella aurantiaca (strain DW4/3-1) OX=378806 GN=cspA PE=3 SV=1
P27484	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1
P0A974	Cold shock-like protein CspE OS=Escherichia coli O157:H7 OX=83334 GN=cspE PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan