Gene detail

Detailed information of BRAKERNUSP00000005134.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: CAH3184646.1, unnamed protein product [Porites evermanni]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M9B1	SPRY domain-containing SOCS box protein 3 OS=Xenopus laevis OX=8355 GN=spsb3 PE=2 SV=1
Q28DT9	SPRY domain-containing SOCS box protein 3 OS=Xenopus tropicalis OX=8364 GN=spsb3 PE=2 SV=1
Q3MHZ2	SPRY domain-containing SOCS box protein 3 OS=Bos taurus OX=9913 GN=SPSB3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010318 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SOCS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050672 all species →	Family	F-box/SPRY and SOCS box protein families	Interproscan
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12245 all species →	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000005134.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.