Gene detail

Detailed information of BRAKERNUSP00000005516.1 in Montipora cactus

Genomic Location: BLFO01000485.1:333571...336467
NR annotation: CAB3985004.1, Enzymatic poly [Paramuricea clavata]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERNUST00000005516

ATGAAAGACAAGGTAAGGGAAAAAGTCACATCTATTGTGAATGCAGAATTGCTATCCCAGCTGGTCCTTAACTTTAAAGCAGGCTGTGTTAAGGAGCACATAACAAATTGGAAAGCAGTCACTACTGATCCTGTTATTCTTGATGCCATCCAGCATCATCACATTGAGTGTGAGGGTCATTGTAGACCTGTGCAGGCTACCCAACCCAGACAAATTATTTTTTCGTCTGCGGACAAGGACATCATTAACCTTGAAATAGCCAAACTCCTCACAAAAGGGGTTATAGAACCATCTAAGCCCAGTTATGGAGACTTTATCTCTACTATATTTGTGATACCCCAAAAGGATGGTAGCCATAGGCTTATTTTGAACTTAAAACCCCTCAACGAGTTTGTGGCATACtatcatttcaaaatggataCCATCCATGCCGCCCTCAAACTCATGCGACCAGGATGCTTCATGGCATCAGTGGATCTTAAGGATGCACATTATTCTATCCCTATTTCAGTAGAGGATCGTAATTTTCTCAAGTTTGAATGGCAAGGCAATTATTTTCGATTTACCTGCCTTCCAAATGGGTTAGCATCTGCCCCACGTTTGTTTACCAAAGTGTTGAAGCCAATCTATGCTCACCTCAGATCCCTAGGGCATTTCTGCATGGGACACATTGATGACTCTTTTCTCATGGGTCACACCTATACCTCCTCCGGGGAAAACATTTGGGAGACAACAAATACGTTTCTCAAATTAGGGTTTGTTATCCACCCTACTAAGTCAGTGCTCATACCCACGCAAGAATTGGAGTTTCTTGGATTTTTGCTGAATAGCAACTCAATGACTATACGCCTTCCACCCAGGAAAGCTATTACTGTTAAACAGGCCTGTGAGAACCTTCTAAATCAGAGCAATCCTACTATTAGGGAGGTTGCTCGGGTCATAGGACTGTTGGTATCCAGTCTTCCAGGAGTGCAGTTTGGCGAGTTGCACTACAGAAATTTAGAACGAAATAAGATTTCAGCTTTAACAATTAACAAGGGTGATTATGATGCACTCATGAGCTTGAGTGCAAAGGTCAGATCAGATTTGCACTGGTGGGTGATCAACGTGAATACagcatttaaaaatataatgcaAACCAACCCTGACTTAACCCTCACTACTGATGCCTCTAACACAAGGTGGGGGGCAATGTGTGAAGGACAGCAGACTGGAGGACTTTGGAGTGCTAAAGAACACTGTTTCCACATCAATTATTTAGAAATGAAAGCAGTTTTGTCTGGCTTGCAATCTTTGTGTAGCGACTTAACAGATAAACACATAAGGATCCAGTCAGATAACACTACTACAGTGTCGTACATCAATGCTATGGGGGGCATTAAGTCGAATGACTGCAATGACATGGCATTGCAGATTTGGCAGTGGGCTAATAGCAGGAATATTTGGCTTAGATCATGCCACATCCCAGGCGTTATTAACGTAGTTGCTGACCAAGAATCCAGGACTTTTGATTGCTCCACAGAATGGTCACTAAATACGAAAGTGTTTAAAGATATCAGCAATATATGGGGCCCTTTCCAAATTGACGTGTTTGTATCCAGGCTAAATTATAAGTGTAATTGCCTCATGCCTGCAGAAAATAGAATTCCACGAGACAACAGGAGTGATACTGATCCCTCTTTGGCAAACCCAGCCATGGTTCACAACATTGTTACACCTTCTGATAGACAGACCTTTCCTTCTCCCCCAATCCACCAATCTACTAACACAACCTCACAGCGGTGCTCTACACCCCTTGCGAAAGCGACTTCGCCTGTTGGCTTGCAGAGTCTCCGGCAAGGCTTCCTTCAGAGCAACTTTTCAGGGAAAGCTACAGAAATTATCTTACACTCCCGGTCCGTTGGAACACAGAAGCAATACCAACCATACCTCAGGCGATGGTTTGAGTTTTGTGGTGAACAACAAGTTTCTCCCTATAGCCCATCCGTGACCTCTGTGCTGGATTTTTTAGCTCGACTTCATGAACAAGGTTTAACGTACACCACACTTAATACAGCCAGAAGTGCTATATCAGCACTCACTGTATCTTCAGACAGGACACCTATTGGGAGTCACCCAATAGTATCAAGATTCATGAAAGGGATCTATAAATGTACACCACCTATGCCTCGATATCAATCCACTTGGGATGTGCAGCCAGTTTTGTCATATCTTTCAGGATTAAGCCCTATGGAGAAGTTAGATCTCAAGACACTGACTCTGAAAGTAACAATGCTAGTTGCCCTGGTCTCCGCACAGAGGAGCCAGACTTTGCATATGCTTAATATTAACTTCATGAAAGATACATCTTCATGTTTTGAGTTTGTTTTACCCGCTCACGTTAAACAAAGTAGGCCTGGCTATCAGCCACCGTCAGTGATGTTGCATGCTTACCCTCATGACAAGTCCCTCTGTGTTTATTCATACCTAACGGAATACCTTAAACGAACCCAGCCCTTGAGAGGAAAAGAAACTCAGTCATTTCTTAGCTTCACCAGACCACACAAAGCAATTTCAAAGGAAACTTTGTCAAGATGGATTCGAACTGTTATGTCCTCTGCTGGAATTGATGTTGCATCATTCAAACCACACAGCACTTGGTCTGCCTCCACTTCCAAAGCCAAGGCAGCATGTATTCCAAGGGACGAGATTTTGCGCACGGCAGGGTGGTCCTCGTCTAGATCTTTTGATCGATTCTACGATCAACCAGTCCAATCCACAACCTTTGCATCTGCAGTACTACATATTGAGTAA

Transcript

BRAKERNUST00000005516

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000024 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02899 all species →	Phage_int_SAM_1	Phage integrase, N-terminal SAM-like domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013762 all species →	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR004107 all species →	Domain	Integrase, SAM-like, N-terminal	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR011010 all species →	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR010998 all species →	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR044068 all species →	Domain	Core-binding (CB) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35617 all species →	PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000005516.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.