Gene detail

Detailed information of BRAKERNUSP00000007143.1 in Montipora cactus

Genomic Location: BLFO01000656.1:56593...67671
NR annotation: XP_022808013.1, uncharacterized protein LOC111345029 [Stylophora pistillata]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERNUST00000007143

ATGTCCACTATGCAGTGGCTTTATATTGGAGTTGATGTTGGTGGGACGAACACTGATGCTGTGGTCCTGAGAAAGAAGGAGGTGCTTTGCTCAGCTAAAGTTCCAACCACTGAGGATGTGACCTCTGGTATCTCTGAAGCCATCCAATCAGCATTGAGCCAGCTTCCAGAGGATTATCAACCCAATCCAACTCAACATGTAGCAAGGGTAAACATTGGCACCACTCATTTTGTGAATGCTGTTGTCCAGAGGAAGTTCCTCACCCAAGTGGCTGTGCTAAGGTTGTGCGGGCCAGCAACTAGAGCCATTCCACCTTTGTGTGATTTCCCTGCTGATCTGAGGAATTTTGTTGGTGGAATGCACTTTTTCCTCAATGGAGGATTTCAGTATGACTGTTCATGTATAACCGATGTTGATGAGGAAGAAGTGAAGAGGATTGCTAACAAAGTACACTTAGCAGGAATAAGAAATGCTGTTATTGTTGGAGTTTTCTCTCCTGCTTCTAAAGAACAAGAAGTTAAAGTAGCTGAGATTATCAGATCTGCCCATCCTGATATGAGTCTGACACTTTCTCATGAAGTGGGCTTGATAGGCTTGCTAGAGCGGGAGAATGCGGCTGTTCTTAATGAGAGTCTAAAGCCACTTTGCAAAAAGACTGTGGCAGCATTTTGTCAGGCTTTGAGAACCCTTGGCTTGAAATGTCCCTTTTATCTCACACAGAATGATGGCACCATAATAAGTGCTGAGCAAGCTCTACACCTTCCTGTGTTAACATTTGCATCAGGCCCAACAAACAGCATGCGAGGAGCAGCATTCCTGTCAGGTGTGCTAGATGCAATAGTGATTGACATTGGAGGAACCACTACTGATGTAGGAGTACTTAAAGGGGGATTCCCAAGACAAGCTTCTGCAAGAGTTAAGATTGGAGGAGTCAACACCAACTTCCAAATGCCTGATGTGCTAAGTGTGGGACTTGGAGGAGGATCAGTCATAGAACAGACGCAGGAGGCAATCACAGTTGGCCCATCAAGTGTTGCATACAAGTTGATGACTGAAGCTTTGGTGTTTGGAGGGAAGATGATAACATCTACTGACATAGCTGTTGCTTTTGGCCTCTGTGAGATTGGAGATAAGGAAAGAACTAAGGACATTCCAGAGGTTATTAAGGATGGAGCAATGGCGGAGATCAAGAAAAAGATTGAAGCTGCAATTGACTTGGTCAAATTCAGCAGTGAGGACCAGCCTGTCATCCTTGTTGGTGGAGGGAGTGTTCTTCTGGATTTGTCACAGACATTGAAAGGAGCATCAACAGTATTTTGTCCTCCAAACTATCAGGTTTCAAACGCCGTTGGCGCTGCCTTAAGTAAAGTCAGTGGTACATTTGATCATGTTGTCCCTTTGAAAAACACAACCCGTGAAAAAGCGTGGGAGGAGTCCGAGCGAGGGGTGCATAAAAGAGCAGTGGAGGCTGGAGCTGACGAACAAACCTTGGAAGTTATCGACAAAGATGAGGTTCCGCTGGCTTATCTACCTGGAAATGTAGTAAGATTTTACCTGAAAGTGGTTGTAGATTTGGCTGAGTGCACAGCAAAAAGCATTGAAGAATTATCGGAGATGGGATATCTAAGCATCTTATCGGGTGAAAAACTTTCACCTTTCAAAGAAGTCTCTGAAGAGGCACAGCAGTCGAGCGCACAAGACGACGACGCCATTGTGTTCAGCGATCCGTATGTAGACCCGGCAACAGGTGACTGGATTCTGAACAAATTTGATATCGAGTGTATCGCCATCGGAGCAGGTATCATGGGCTGTGGTGGAGGAGGCAGTCCTTATCTTGGGAGACTGAGAGCGCTGGAGCTCATTAAGAATAGAAAGGAGATTCGTGTAGTGCATCCGAACAGactAGGATCAACTCCTGAATTGACGGGTAACGTAATAACTCCAGCCTTCATGGGTGCCCCTGTTATCTTGATTGAGAAGCTTTTTAGTGGACGAGAAAGTATCTCAGCTGCGGAGGCAGCTTCAGCAATTTTAAGGGCTGGTGGTGCTATTAATGAACATGACAATGGGGATGGAATCAGGGAAGCGAAAGATGTTCAAGACTGGATGTCTTCTAAAAGTGAGCTTGAATCAAAAAGTAAAGTCGTCGCAGTCGTGTGTGCCGAGATAGGAGGTGCCAACTCTATCGAGCCTTTAGTGGCTGGTGCAGAACTGGGACTCCCCATTGTAGACGCAGATGGCATGGGGCGAGCTTTTCCTGAGTTGCAGATGTTTTTGCCGTTTGTCTATGGCAGCCTGCCATACCCTGCAGCTGTGGGGGATGAGAaaggaaatgtagttgcgttgACCTTTGCAGAAACGCCAAAGCGCTTGGAAGGCTTTCTAAGGATCAAAACAGTAGAGATGGGCTGTATGGTTGGCTTTGCATTTGTCCTCGATTGGAAAGATGTGCAAGAAAAATATGCTTTGCATACCTTGAGTAGAACATGGCGCCTGGGGAACACTGTGCTTCGTGCAAGACACAACAAGGCGTCCCCAGTTGAGAGTATTCTTCAGCACGAAAATGGGAAACTTTTAATTGTTGGCAAGCTTGATGTTAGCCGCGTAATTGAAGGCGCCTTTAACAAGGGAAAGTTAAACATTGAGGGCTCAGGGAAATTTATCGATCAAAGCCTCAGCATAGAATTTCAGAATGAAAACTACGTGGCTTTCGTCGCCAAACCTGACGGAACTAAGAGTATTCTGGCCACAGTTCCTGATCTGATCTCCTTAGATGATGAAGATACAGgccagccaatcacaacagaggAGGTCCGTTATGGTCTCCGTGTGGCTGTAGTCGCCATGCCCTGCTCTTCATTGTGGAACACCCCGCAGGGATTGGCAGCTGGTGGCCCGATGGCGTTTGGTTATCAAGATGTTGTTTACAGCCCTGTGGACTCTTACGAGGAGCACCCTCCCATCCCTAGAGCCtga

Transcript

BRAKERNUST00000007143

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2W0EVE0	Caprolactamase subunit alpha OS=Pseudomonas jessenii OX=77298 GN=capA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002116 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06032 all species →	DUF917	Protein of unknown function (DUF917), N-terminal	Domain	Interproscan
PF01968 all species →	Hydantoinase_A	Hydantoinase/oxoprolinase	Family	Interproscan
PF20906 all species →	DUF917_C	Protein of unknown function DUF917, C-terminal	Domain	Interproscan
PF05378 all species →	Hydant_A_N	Hydantoinase/oxoprolinase N-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010318 all species →	Domain	DUF917, N-terminal domain	Interproscan
IPR027479 all species →	Homologous_superfamily	DUF917, N-terminal domain superfamily	Interproscan
IPR024071 all species →	Homologous_superfamily	DUF917, C-terminal domain superfamily	Interproscan
IPR002821 all species →	Domain	Hydantoinase A/oxoprolinase	Interproscan
IPR048350 all species →	Domain	DUF917, C-terminal domain	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR045079 all species →	Family	Oxoprolinase family	Interproscan
IPR008040 all species →	Domain	Hydantoinase/oxoprolinase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11365 all species →	5-OXOPROLINASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006749 all species →	Biological Process	glutathione metabolic process	Interproscan
GO:0017168 all species →	Molecular Function	5-oxoprolinase (ATP-hydrolyzing) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000007143.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora cactus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora cactus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →