Gene detail

Detailed information of BRAKERNUSP00000007209.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029196310.2, protein PALS1-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000007209

ATGGGGAAGATTCGAAGGAATCGGCAGAAGTTACATCTTCAAGCCGTGAAACCGGTGAATGAAAAGAAGGAAGAAGATTTCTTGAAGCCAAATGAGtccagCCTTGCTGCTATATTTCCAACCGCTGGACTGTTTGACGCAGGGAGTGTTTCCACGGAAACAGGTGTCCACAAAACACGGAAACCCCAACAGAGTAAGAAGGACAGGAGGAAAGAACGACATGATAATTTCTTGAAAAAGTTGCATGCAGGACGAAAGCTtgatgaagaaattaaaaaagccaAGAAGAGAGCTCAAATACCAGTGGTCGGCGACATGCAACCTTTGTTGTCATCTTTGCCGACAATTCCAACGCTGGAACTtacaaaaatgcagaaagaaacaaaaaacagAGGACAACTAGACGGAGGACCAAAAGGGAAGAAGTTGAGCAAGAAGGCTCGACAAGCTCTGCAGGCCAGCGAAATCGCTCGTTTCCAGCAAGTTCTACAGCATCCGGCGTACCAGGCAAATCCTCTTGCGGCTATCTCGGAACATATTAAGAATGCAGTTCAAAGAGAACGTGAAAATCAGACTGTCGATGAGGATTTTGGGGCACCAGAGTATGAAAGCAGCAAGCCAGCGGTCGACATCGCACAAGAGGTTGTGGACGACGTTCTTCCCTGTTCTCTTTCCGACATAGAGGCACAAGAACTGCAGCACATTCTCAAGAAACCACACGTAAAGGGCTTCTTGCAGGCTCACGATTCGGTAGCAGCAGGAGATATCACCTCAAATACAACTCAAGGTGAAGAAGAGAACATTGCGATGGCCAATGAAGATGATGTGACACTTGAGAAACCCGAGAATAAAGCCACAACTCCAATAACCGAAAGCCATCAAAAGGAAGGCTGCGATAGAGtggatggtgatgatgattcggaagatgatgatgatgattcagaagatgatgatgacgatgatgataaagTTTGTCATATTAGAGACAGTGATGAGGATCTAGGAGAAACGGGAGACAGGGCTGATGAATCTTTCAACGAGAGTGAAGTTGATAGTGATAATAACCTGTACAATTTGTCTCACGACAAACCATCCTCCTCTGATACCAAAAATGTGCCAGTGATAGTTTCCGAAGTGCAAATACATGTTGCCAATGAAGCATGCTTTGGTGTGAATGAAAAATCTCCCCGTAAAAATCTGTCTGTAACAGGCGACAAGGTCTCAACCGCTCAGACACATTTCATTGATAACGGTTTTGATAGCGAAGTACAACAAATAGAGAGGACGGACATGGACACTTTAGTTTCTAGCAAAGACACTCTACAAGAAACGAGAAACGCCGTTAAAGACGACAGTGTGAAAAATGGTCCAAAAGATGTTTCCAACGAAATTGATATTGAATACGAAGGCGATGAATTTGGAAGGGAAGGAATATCCCAAACCAATGGAAAGGTTGGGGGACCTGTGGTGACGATTGCTGTAAATAATGCAAAGACAGTTAGACTGTTCAGGAATGCTAAAGAAACTTTGGGAATTACAGTAAAGGCGGTGAAGAATACTGACAATAACGTGAGAATAGTGGTAGCAAGAATTCTAAGAGGAGGCCTTGCCGATAAATTTGATGTTAAAGTGGATGGCTGGCCCGTCTACGAACCTGTCGCTAAATATCTGGAAATGCCACAAAAAAGGAGACTGCTGCTGCTAATAGgGGCACCTGGAGTGGGACGAAACGAGCTGAAGAAGATGCTGCTCACTAACAGTCCTCAAAGATTTAACACGACTGTTCCTCATACTTCAAGACACATGAGGAGTCACGAAACAGATGGCAAGGAATACTTCTTCGTATCAAGGCAAACCAtggaaaatttcattcaaaagaaaaaattgataGAGTTTGGTGAATACAAAGGGTGTCTTTACGGAACGTCCAAAGACTCTATCACACGAGCCATGAAAATAGGAAAAACGTGTGTTCTAAAAGTTCAACCAGAGGTCATGTTGTTGCTAAGAACGTCAGAATTCAAACCGTTCTGCATCTTCGTCAAACCGCCTTCTTTAAAGGAGCTTCGTGCATCGAGACCGACCTTGCAAGGGAAAGCCAAGCCTACCTCAAACAAACCACACCTGAGAACATTTAAGGAAGAGGAATTGCAAGAGATGATCAGCGCATCGAGAGACCTTGAAGATACCTATGGAAAGTTGTTTGACCTTACAGTGGTCAATAAGGACATCGATGAAGCTTACAATAGTATTTTAAGAGCACTGGAAAGACTCGAGCGAGAAGAGCAGTGGGTACCGGTGGAATGGGTGCAAACATCCTAA

Transcript

BRAKERNUST00000007209

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8KBF6	MAGUK p55 subfamily member 7 OS=Xenopus tropicalis OX=8364 GN=mpp7 PE=2 SV=1
Q6P0D7	MAGUK p55 subfamily member 7 OS=Danio rerio OX=7955 GN=mpp7 PE=1 SV=1
A6QQZ7	MAGUK p55 subfamily member 7 OS=Bos taurus OX=9913 GN=MPP7 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15341 all species →	SLX9	Ribosome biogenesis protein SLX9	Family	Interproscan
PF00625 all species →	Guanylate_kin	Guanylate kinase	Domain	Interproscan
PF02828 all species →	L27	L27 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004172 all species →	Domain	L27 domain	Interproscan
IPR036892 all species →	Homologous_superfamily	L27 domain superfamily	Interproscan
IPR028160 all species →	Family	Ribosome biogenesis protein Slx9-like	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR008145 all species →	Domain	Guanylate kinase/L-type calcium channel beta subunit	Interproscan
IPR020590 all species →	Conserved_site	Guanylate kinase, conserved site	Interproscan
IPR008144 all species →	Domain	Guanylate kinase-like domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050716 all species →	Family	Membrane-associated guanylate kinase	Interproscan
IPR014775 all species →	Domain	L27 domain, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23122 all species →	MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000007209.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.