Gene detail

Detailed information of BRAKERNUSP00000010054.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: B8VIW9.1, RecName: Full=Fibronectin type III domain-containing protein; AltName: Full=Neuroglian-like protein; Flags: Precursor [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000010054

ATGTCCGGTGCAAACACCCTTTGCAGTTCCGGTGCCTTGACTTTAACAACACAATCAGgcgTACCAGATCCCGCCATATTTAGCATTCCATCTTTTACTTCTGCAACATCAAATTCTGTTCAAGTAGCTGTGGAGGGAAGAAGTAAGGTGTTGTATTGCTTAGCTACTGCAAGACCATTCCCAACAataacctggaaaaaaaatggaaaggaaCTTCGACATGGGGTAGATTTCTTTGAAATTCCAAGTCAATTGAAAGGACGGCTCCTGAACATCACAAAGGTGGATGAGAATATGCACGAAGATATTTATACCTGCCAAGCCAGCAACAATCAAACCACAGAAATTGGTCCACAAGAACGTAATATTAACCTTCGGGTAGAAGTTGCTCCAAGATGGATTGTTGAACCACctaaagtgaaaaaatttcCCATAGCATCAAATGCAAACTTGAGCTGTGACGTGTATGCAGAGCCTGAACCACAAATTAAATGGTTCAGAGATGGAGTTGAATTAGTGCCAAGCCGAGATCAGGGCAAATACGCCTGCTATGCGAAGAATTTCCTGGGAAATGATTTGGCAGAAAGCACTGCGATTGTTTATGAGAAGACGCGTATAATACTTGCACCAAAAGACAGGAATGTTAATGAAGGAAGCAGGGTGGACTTGCGCTGTGAGGCTCAAGTGGACGACAGGCTGGAATTGCATTACCTTTGGAAGAGAGATGATGCTATTATCGAGTACAACCAGAGGGTCACTTGGGAACGGAATGTATTGACCATTGCCAACTTAACAGTCGAAGACGCTAGGATTTACACCTGTTTGGCGTATACTCCATACCCAAAGAGATCTGGAGACTCTGCCTCGGCTACTATTGATGTCGCAGGTGCCCCATATCCACCATACAATCTAAAATTATCTTCCGACTGCCAAAACCGAAACACAACATTGACCTGGGTAACGGGCGGAGCGAATCAAGCCCCGATTACTCATTTTTTGGTCGAGCGAAAATCGACCCACCCTGATCATGACGACTTCTGGCAAGTCATTGCAAGTGTTACCAAGCCTAACGCCACTTCATATGCGCTGGTGAAAATGGCCGGAAACGCGAGCCTGGCCTTCCGGGTTAGAGCTGTCAATGGCTTTGGGCCAAGTCGTCCGAGTAAACCCACGAGCTCGGTGTGCCGAACAGACGCTgcagCTCCCGACAAATGGCCTGACAACTTTAGGGGAATCCCCGGCAAGGCTGAACAGCTTGACATCGGATGGACTGCCATGCGAAGGGTGGAGTGGAATGGTCCAGGCCTCTTCTACAAGCTGTGGTATAAGCGAGTAGGTCCCGCAAACAGTTTGGAGGAAATTCAACTTGACGATCCTAAAACAGAAAGATTTAACATTCCCAATGCTGGGTATTACGTTCAGTGGGAGTTCCAGATCCAAGCTATTAACGATATTGCAGCTGGACCCAAAAGTCCATTtgttaaggcattttcaggccAGGACCCACCCGCTGGAAGACCAGAAGATGTCACTGTGGGAACCGTGACGGAACGCATTGTGGAATTGTCATGGAAACCTGTTACTGTTACCAGAGGAAGTGTGGATGGATACAGGATTTATTACTGGGGAGAAAGCCTTGTTTCTGCGAAGAGACGAAGACGTGCTATTCCAACTTTTGCGTCATCCACAAATGTAACGGGAGGAGGTACGCAGAGTTATACTGTGACCGGGTTGAAACCGTACACGCGTTACACCATAGCAGTCACTGCCTACAACAGCGGAGGCGATGGACCGGAGAGCGAAGAAGTTAAAGCTGAAACGTCAGAAGCCGAACCTGGACCACCGTCGAATGTCAAGATCTATGCTTTTGCAAAGTACATCTTGGTCAGGTGGGAGCCTCCCTTGGAACCCAATGGCATTATCACTAAGTATCGTATAGGCTCCAACACGTTCACAGGATCTCAGCACAACGACGTCGAGATAACGAATATGCAGGAAACTAAAGCTGATGTGCGTGAGAAATTACTGGGAAATATGGAACCGGAAACGAACAATGTCATAGAAATACAGGCTATGACATCCATAGGATGGGGAGAGGGCGTGAGAAAGACCAAAAGAACTGTGCCGTGGTCAGCTCCTGCCAAGCCTGAGAAGCCAGAACTCGAAGGAACAGCAGTAAATAAAGTTAGAGTTTATTACAAGTTTGGATTAGGTGGCGGCTACACCCACGAGTTCTTGGTTATGTATAGGAAGAAAGTAGTTGGAGAGGAATTTCGGAACTCaagctggataaatcactttGAGGAGAAGAGTGTTGAGATCGACCGTTTGGAGCCAGATCTGTACGAGTTCAAGACTGTAGCGCGAAATGATTTTCCCGATGAAGTCAATCCTGAAGAAAGTCCAGAAAGTGACATCGCGGAAGGAAGACCTTTACCAGGCATCTTTAGTCAACGGACAACGACGCCAATTCACCAGACAGCTTGGTTCATTGCATTGCTGGTTTTTATTGCTATACTGATTCTGGTTTTGCTTATCTTTGTGCTCTATGATCGTTATCAAGGCGCTAAATACCCAGttGGTAAGCGTGAGACGAAGAGAGCAGCTCTTATGGATCGCGAACCTTATGACGAAGAGGAAGGAGCTTTCACTAATAATGGCCGGACGGAAAACCCTCCACCGAAGTCCCCAGATTCTGAGCGGGACAGCTTGGATGACTACGGCGAAGGACCTCACTTCAACAAAGATGGCTCCTTCATAGAGGAATATGGCGACGAGAAAGAGGCACccccaaaaaagagaaagaggcACCCCCAAAAGGATCCTTCGGCTCTGGGCACGTTTGTTTGA

Transcript

BRAKERNUST00000010054

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B8VIW9	Fibronectin type III domain-containing protein OS=Acropora millepora OX=45264 PE=1 SV=1
P32004	Neural cell adhesion molecule L1 OS=Homo sapiens OX=9606 GN=L1CAM PE=1 SV=2
Q90478	Neural cell adhesion molecule L1.1 (Fragment) OS=Danio rerio OX=7955 GN=nadl1.1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000412 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13882 all species →	Bravo_FIGEY	Bravo-like intracellular region	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR026966 all species →	Domain	Neurofascin/L1/NrCAM, C-terminal domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170 all species →	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001764 all species →	Biological Process	neuron migration	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0044295 all species →	Cellular Component	axonal growth cone	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06756	NRCAM; neuronal cell adhesion molecule	-	Cell adhesion molecules	ko04514	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.