Gene detail

Detailed information of BRAKERNUSP00000010745.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_015767064.1, PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 4-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000010745

ATGAAAGATGGACGATTTGTCTCCAACTGGGATGATCTCGGTGATTACGTTATTGAGGAGGCCACTGAAGATGACCAGGGAGGCTATTCTTGTTTGGCTTCAAGTCCAGCTGGTTTGATACAGTCCAGTGTGGCTTACGTAACCGTAAATGATCCACCAAAGATCACAGTACAACCAGTCAACAGCAGCGTGCAGCTGGGAGGCAGGATCACACTGTATTGCAACGCATCTGGGGATCCTGTGCCTTCATTTAAGTGGTTCAAGGGTGGCATCCCAATGGTCGAAGCTGCAGGGATTAAACCATTTCTCCCACAGCTTGTATTAGAAGATGCGCTCAACGAAGACGAAGCACGATATTACTGCGAAGCTTCTAATATCGCTGGCAAAATACAGTCTAACTCTGCATTCCTTAAGGTTTTCGccaaaaaagcACTAGTGTCCATGACCCTCTCCGTAAAGAATCCAAACAAAGATGGAACCTGTCAAATATTTGACGTCAAAAATTTTCAGAAACTCCTGAGCGAGGCGCTGAAAATGAACGTGGAAGTGACAAGTTTTAAAGCCCCTGACAGATGCAAGGAACACCAATGTGACTTAAAGCCTTGTAAAAACAATGGCGATTGCTCGCGCCAAGGCTCAAAGTACACTTGCCTGTGCCATCCAGGGTGGTCTGGTGACCACTGTGAAATTGATGTGGATGAATGTAGAGGAGatccaTGCTTTTACAACGGTACTTGCTCCAACACTGATGGTTCTTACAAATGCAGTTGTACCTCAGTAAAGACAGGAAAGACATGTGAATTGGACAAAGCTGCCTGTGTTGGCAATCTATGTAATGGAACGGACACGTGTGTCCTTTCTGATCGATCATCTCGCGGATTTCAATGCGTGAATAAACAACTAGAGACGGTTATGATTTTGCCAGAGGGTCGTTCCTACGGAAGCGTTTTCGACTTGGAGAAAGAAATCGAAAATTTAATCAAGTCTGCTCCAAATAATGCTAACAAGAATGCGACATCAAGGAGAGCAAGAGAAGTCCCCAGCAACCTAGATtacggcgcatgctctgttCGCGTCACCAGCTATATGGAGAAAGAAGTTCGGTTTGTGCTTATTTGTCCGGAGGAAATGACGCCACCTGAGCCGCAAACTACCCAGCGGTTTGTTTGTGGCTTAATGTTTGACGCCGGTCAATCTACGTCATGTGGCGGAAGTGATGCAATGATGACGCCCAGTCCACCAACGACCAAGCCTCCGGTCAAACTTCTTAAAGTCCAGTTAACTCTCTTTGCCCGAGAGAGCAATTCTGGAAACGATGTGGATGCCCATAAACTGATCGAAATGATCAATAGTGGAGAGGCCAAAAGGCTGGAAGAAAACGGCTTTAAAGTGGAAAGTGTTTCAACGAcTGAGCCCGAATCCAACGCTGGTTTAATCGCAGGTTTAACTGTTGGAATTCTTTGTCTTATCATATGCGCCGGTGCTATTGTAGTTGTTTTCCTAAAAAGGCGGCGTAAGCCggtatttttccatttctccATCCAGCAAAGGTCAGTAATAGGCCGAAAGGAGAGCCACAAGAACATTCTCGAAAGAGAGGTGTCCATGAAGGATATTCGTCGCTCAGAAAAACATCGTCTCACTGTTGCCTATGATGACGAAAGCCCTGATATGTCGGACGACGAAGGAGATTTTACGGTTCAAGTTGATCTCAGAAAccgacaagaaaaaaagaagtctCCATCTCCGATGAGTAATGTGCAATACTATTACAACAAAATCACAACTCAGGAAGCCGAGGATATGCTTTTATCCACCGTGAATACCGGAACATTCCTTGTCCGTCGAGGAACAGTCACTAAAGAATTTGTGTTGACAGTCAGAGCACCTGAAGGGGGCCCTTCCTTCAGACATCTGCCCTTCAAATACGACAAGGGAAGCAATGGATTTGTGGCTCAGTTTGGATCCATGAAGGAGACCATAAACTTTACGACACTGAAAGAACTTGTAAGTCATTTCCAGCTTACACCGATTGAGTTCGAAGAAGATTCACCCGATGTGGTGTTGACCGTTCCTTGGAATAAAACcgaggtttga

Transcript

BRAKERNUST00000010745

Protein

Uniprot

Uniprot term	Description
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q8VHS2	Protein crumbs homolog 1 OS=Mus musculus OX=10090 GN=Crb1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00017	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000980	Domain	SH2 domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0043025	Cellular Component	neuronal cell body	Interproscan
GO:0050808	Biological Process	synapse organization	Interproscan