Gene detail

Detailed information of BRAKERNUSP00000010864.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029197886.1, paired amphipathic helix protein Sin3a-like isoform X1 [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000010864

ATGACTGGTCCACGACTTGGAGGAGTTGCCACTGATATACCCATTTACTGGAGTAATCCCAAACTGTGGTTGGCTGctgtttgtgttgttttcaaTCCTTTATTCTGGAATGTTCAGAAgcgagactgctcgcagtctagttTTAACCTGGTGGATACCAGCTCCACATGCCCAAATTTGGATGATGATTATGGCGAGGCAAAGGTTGCCCGATGGGAATATAGAACTCGAGCCCTGACACATTATTTTGGAGCTGCTGAAAGAGGATGCTATGCCTTAGCTGTGGTCATTTGCCTTCTTGGGCTCTTCAGAGATTACTGGTTTGAGGAGGCAATATCAAGCCAGCCAATAGCAGTTGCCCTGTGTACTGACCGTGTGGAGATTTTAGGAACTCTATTGATTGTCATTGGCACAGTTCTTGTTCTCAGCAGTACTTGGTCCCTTGGAATAATTGGAACATTTCTAGgagATTATTTTGGACTTCTTTTAAGCAAAAGAGCCACAAGTTTTCCATTCAGTATCATGAACAACCCAATGTACTGGGGATCAACAATGAATTTCTTAGGATACTCATTACGACAGTGCAGTCCTACTGGATTACTTTTAACAGCATTGGTTGCAGCATGTTACAAGATTGCCATAATGTATGAAGGAGTTCAATCACCAAATCCACAGGCACACTCTCATGTACAGAACCCGTCCTCAGGGCATCATCAGggcCAGGGTCAGGTTCATGCACAGGCACAGGCTCAGGGACAGCAACAGCAATTTCAAAGATTAAAGGTTGAAGATGCTCTGTCATATTTGGACCAAGTCAAGCTGCAGTTTGGTAACCAACCTCAGGTTTACAATGATTTTCTGGATATCATGAAAGAGTTTAAATCTCAAAGTATCGACACTCCAGGCGTCATTAGCAGAGTTTCGTCGCTCTTCAAGGGTCATCCTGAACTTATTGTGGGTTTCAATACATTCCTCCCTCCTGGGTACAAGATTGAAGTGCATGCCAGTGACCCAGGAACTGTGTCAGTCACAGCTCCAAATGGGCAATCACAGATCACAACCATCCTTCAACCTAATCAAAATCAGCATCCTACCCATCAGTCTAGTGGCCACCAaggacagcaacaacaacagtctCAGCCAAAACAACCCCAGCAACCACAACAACAGCCTCTACAGTCTCCAACAGCTCAGCAAGGACAGggTCAACAGCCAGTGGAGTTCAACCATGCCATTAATTATGTTAATAAGATAAAGAATCGATTCCAAGGACAGCCTGACATCTATAAGGCTTTCTTAGAAATTCTTCACACATACCAAAAGGAGCAGAAAAATATCAAGGAGGCTGCCATGCAGGGAACCCCTCTCTCTGAACAAGAGatTTATATGAGAGAGGCTAAACTTGCGAATGAGGTTTATAAACAAGTTGCCCAGTTGTTCCAGAATCAAGAGGATTTGCTTCAAGAATTCAGTCAGTTCCTTCCTGATGCAAATGGTGCTGCAACAATGCCTGGGGCTTTACTGTCATCAAGTAAACTACAATCTCATTTATCTTCAGCAAGAAATGAATATGCACCTCCTTCAAAAAAACCAGCAGTGGGTCCAAATTCATCAAAGCGCATTGCACACCAGATTCGAAGAAATTCGAACAGCATTTCGTCGTCTCCTACTCATCCTCAAGCTAAGAAGAAATCAAGAAGTGCTATCAAAGATGTTACCTTGGCAGAAGCACAAAAAATTGGAACCTTTTCAGAGTTTGCATTCTTTGAAAAGGTGAGGAAAGCTCTTAAAAATGCTGAACTTTACAATAATTTCCTTCGTTGTCTTGTCCTGTTTAACCAAGAAGTAATATCAAGAGCAGAACTTGTGCAGTTAGCAGCTAACTTCCTTGGAAAATACCCGGAGCTGTTCCAGTGGTTCAAGGAATTTCTTGGTTACAAGGACTCCTCTCCCATGGAGAGTGTGGCGAGCTTCAAAGAAAGAACATCAGGAGAATTgcaccacctcgaaatcgACTATTCTTCGTGTAAAAGATATGGTACAAGTTACAGAGCTCTTCCCAAAAGCTACACTCAGCCCAAGTGCAGTGGTCGTACAGCTCTTTGTAGAGAAGTTCTCAATGACACCTGGGTGTCTTTCCCCTCTTGGTCAGAAGACACCCCTTTTCCTGGGACAAGAAAAACTCAATATGAAGAGTATATATTTAGGTGTGAAGATGAAAGATTTGAGTTGGATGTAGTGTTGGAATCAAATCTTTCTACTATCCGAGTGTTAGAAGCCATACAGAAAAAGCTTCAAAGAATGCCAGCTGAAGAACAGGCAAAATTCCGGCTTGACAGCTGTATAGGGGGAACCTCTGAATTCATCCACAGGAAAGCTATTCAGAGGATTTATGGAGACAAAGCCCCTGATATAGTTGATGGTTTAAAGAAAACACCTGCAGTGGCTGTACCACTTGTTCTTAAAAGGCTAAAGACCAAAGAAGAGGAATGGCGAGAGTCTCAGAGGCAGTTCAACAAAATATGGAGAGATCAGAATGAAAAATATTATCTCAAGTCTTTGGATCATCAAGGCATTACATTTAAGCAGAATGACTTGAAATCTATGAGATCAAAGAGCCTTATTAATGAAATAGAGACTATTTATGATGAGCGACAAGAACAAGCTGCAGAAGGTAATGGGGATGCCACAGGGCCCCACTTGATGTACACCTATCAGGACAAGTCTATACTGGATGATGCAGCTGGACTTATTGTTCACCACATGAAGAGGCAAACCAGTATCCATAAAGAGGACAAAGCCAGGATTAAAGTGCTTCTGCACTACTTCTTGCCAGACCTCTTTTTTGCGCCCAGAGGTGAACTGAGTGATGATGAAGACTCTGTAAAGGAACTCAATGGTCTTGgcAAACCTGAACTGACCAATGGATTACCAGAAGCTGAAGCGAATGATGCTTACAACTTAATATATGTAAATAACAATTGGTATCTACTCTTCAGGCTTCATCAGATGTTGTGCGAACGGCTGTTGAAGATGTACCAGCAGTCAGTCATGATAGCTGAAGGTGAAGCTTCTgataaacaacaaagaaaacaagccACAGCTATTGCTTTGAGATTGAAGGCACCCAGTGAAATAGACTTGGAGGAATACTATCCCGCCTTTTTGGACATGATTAGAAACTTGCTGGATGGTAACATGGATTCCACAAACTTTGAGGATACCTGTCGGGAGATGTTTGGTGTACATGCCTACATTGCATTTACTATGGACAAGTTGGTTCAGAACATTGTTCGACAGCTCCACAACATTGTAACAGACGAGATATGTGGTCAGGTGACTGAGTTGTACCAGCAGGAGCAGGGTAACCTAGCGACTGGAGGAAGCTCGGCCACTCAGCACACTCGCGCAGCTGGAGAAGCAGCTTATCAGAAGAGAGCGGAATCCCTGTTGTCTGATGAAAACTGTTATAAAGTCGTCATTCATAAGGATAAGAACATTTGCCGGCTGAGTCTTGAGTTGCTGGATACAGATGATTCCCACTCAGAGGATCCGGTGGAGGTGGAAAAGTGGAATGAATATGTGGAGAAGTTTGTTGGCAGCGAAGAGGTGTCCACAGAAGTTAAGGATCATTTACAGACAAAACCCATCTTCTTGCCAAGgacTGTGCGCTCCAATTCGCGAATGAAGTCCGCCACCCCAAGCAATGAAAAAGAGTCGACAACAAATGACAATGGCTCTTCAACTGATGAGGCTGAAAGTGAGGGAAATAACAGCGAGAAAGAGGAAGAGAATGACGAGGTTGAAGACATGGAAGTGGAGAACTCCATGGAATGCAAGTTGAGCTTGAACTCGTACAAGATTCGCTTTGTGAAAGGAAGCGAAGATTACCTGTACAGGCGGCAGGCTTTGAAAAGAGCGAAAGAGTCCCATCCATCGGTAGCGAACCGCCTTCACACCAGATTCCAGGCCTGGTTAAGTAAGTGGGTGGAAAGCAATGTTTCAAGTGACCAGGAGAGTAGATGCCGTGACTGGCTCCTTGGGCGGATAGATGGGCTCCATCCCTGCACCACAACTTGCGACACGATCGCGAACGCGGTCATTAAACACAACAAATACTCCGTAAAATGGGAAGAGAACAGAAGGGACAAACAACAAGAGGTTGGACAACCGGCCAATAAGGATGGCGAACAGAATCCCGCCTCATAG

Transcript

BRAKERNUST00000010864

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60520	Paired amphipathic helix protein Sin3a OS=Mus musculus OX=10090 GN=Sin3a PE=1 SV=3
Q96ST3	Paired amphipathic helix protein Sin3a OS=Homo sapiens OX=9606 GN=SIN3A PE=1 SV=2
Q62141	Paired amphipathic helix protein Sin3b OS=Mus musculus OX=10090 GN=Sin3b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003099 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04191 all species →	PEMT	Phospholipid methyltransferase	Family	Interproscan
PF02671 all species →	PAH	Paired amphipathic helix repeat	Repeat	Interproscan
PF08295 all species →	Sin3_corepress	Sin3 family co-repressor	Domain	Interproscan
PF16879 all species →	Sin3a_C	C-terminal domain of Sin3a protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036600 all species →	Homologous_superfamily	Paired amphipathic helix superfamily	Interproscan
IPR003822 all species →	Repeat	Paired amphipathic helix	Interproscan
IPR007318 all species →	Family	Phospholipid methyltransferase	Interproscan
IPR024960 all species →	Family	Phosphatidyl-N-methylethanolamine/Phosphatidylethanolamine N-methyltransferase	Interproscan
IPR039774 all species →	Family	Transcriptional regulatory protein Sin3-like	Interproscan
IPR013194 all species →	Domain	Histone deacetylase interacting domain	Interproscan
IPR031693 all species →	Domain	Sin3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12346 all species →	SIN3B-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006656 all species →	Biological Process	phosphatidylcholine biosynthetic process	Interproscan
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan
GO:0000118 all species →	Cellular Component	histone deacetylase complex	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0016580 all species →	Cellular Component	obsolete Sin3 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11644	SIN3A; paired amphipathic helix protein Sin3a	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.