Detailed information of BRAKERNUSP00000011870.1 in Montipora cactus

Genomic Location: BLFO01001123.1:233498...251915
NR annotation: XP_029207157.1, exosome complex component MTR3-like isoform X1 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P0I8Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2
Q28F19Exosome complex component MTR3 OS=Xenopus tropicalis OX=8364 GN=exosc6 PE=2 SV=1
Q8BTW3Exosome complex component MTR3 OS=Mus musculus OX=10090 GN=Exosc6 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001803 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for BRAKERNUSP00000011870.1 in Montipora cactus.
 InterPro
InterPro termTypeDescriptionSource
IPR050080
all species →		FamilyRibonuclease PHInterproscan
IPR036345
all species →		Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR027408
all species →		Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11953
all species →		EXOSOME COMPLEX COMPONENTInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000176
all species →		Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177
all species →		Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0005730
all species →		Cellular ComponentnucleolusInterproscan
GO:0016075
all species →		Biological ProcessrRNA catabolic processInterproscan
GO:0034427
all species →		Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034475
all species →		Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0071028
all species →		Biological Processnuclear mRNA surveillanceInterproscan
GO:0071051
all species →		Biological Processpoly(A)-dependent snoRNA 3'-end processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERNUSP00000011870.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP