Gene detail

Detailed information of BRAKERNUSP00000012845.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044178573.1, condensin complex subunit 1-like [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000012845

ATGTTCAAAAATCCATTGATTACAGTGCCTGTTGTTTCTGCAAGTGAGACGGTTGCATCCAAAATCTGGGAAGCCATAAGACATGAGGTACAGGCCACCATTGAGGAATATATTGGTCATGAAGAGATTGTAGATGACGATGATGGGCCAGTAGAGTTCCAGGGAGATGTGAACACTGCTCTTGTGAGCGCACTGAGACAGATCAAGACTCACTTGAATCAAGGTCATCATAAAAAAGCCCTTGCCGTGCTGAAAGCTGCTTTGGTAACATGGCCAGGGGAAAGCATATTTGTTGTCTCTGATACTAATGACAAGCCTTGTGAGGACGATCAACAACGtgaagaaattgaaaaggACTCTGTGGAACGTTCTGTTGAAGAGCAGCTGTCAATTATGAAAGCAATATTTCTAGCTGCTGATGACGAAGAGGCTCCTGCACCAGTGGAGGATGAAGCTATTGATCCTAATGAGCTGCTTCAAGTTTCCACGCAGCATGATCATGAAAGCTCATCATCAAGCCAACCCACCAATGGAATTGTTAATGAGATCACTAAACAGCAAATGGTGGTTCAGTTTTTGAAGGATTACGTGCATTTCCAAACTCAAATGGAGAAAGCTATTCCCACAGTATGTCAGCTGTTGGGCTCTAAGACCATCTCAGATGTCAACGAGTCAATTGAGTTCTTTGTTGTGGCTTCGGAGTTTGGTCTGAAGTCAGCCATCATTGGGGTGCGACGCATGCTTGTTTTGGTCTGGTCTCGTGACACTGCTGTCCGTGATGCAGTTGTGGAGGCGTACAAGGGACTGTATTTGGACCCTGAAGCACCAAATGCAAGAGCTAAAACAGCATTGATAGTGAAAAATCTGATTGCTCTCACACAAGGGGCCTCAATTGGAGATCTTACATCTTTAGAGGAGCTGATGAGTGAattaatgaaaggaaaactaATTCCTACTGCTGTTATAAAGCTGCTCTGGGAAAAATTCACCATGAAGGCTCCACAAACAacatcagaagaaagcaaagCCGCATTAGTCCTACTGGGAATGTTAGCAGGGGCGGAGACTGATATTGTTCGCAGCAATATTGACTTGTTAGTATCCACGGGCCTGGGACCCAGAGCTGAAGACGATTTTCAGTTGGCTCGAGTGACCTGCGTGGCTTTGCTTAAACTTGCTAAAATTCATAAGAAACCCGGCTGCAGTGCCGACGAGCCATTTCGGTTTGCTGCCAGTCACGCGCTGTTTGAGCGGCTCTCTGAAATAGTTGTGTCAGGTGTTCGTAAGCTTGATAAACTTGACTGGACTCCCATGATGGAACAAGCGCTGAGTGTGGTTTACTCTCTTGCTGAACATCCCGAAACTATCGCTGAGAATATCATCAAGAAAATGGCTGCTTGTCTGCTGGACAAATCAGACAACAACACAGACTCGGAGGGGAATGGTTCTGATGAAAGTACAGTTTATAACGATGGTGGATCTTGTAACTTGAAAATCACGTGTCACCCTGGCATTTTGGCGCGATTCCTTAGCTTCTCAGGTCACGTCGCTCTACGTCATATGGTTCACTTAGACGTTTCTGTACTAGGGGAAATTAAACGGCGTCAAGCCATTGAGGAGAATGATAAAGAGAAAAAAGCTACCAAGACGAAGGGGGCTGTGGACTCGTCTAGCACAAACACTTCTAAGGACCCAAGTGCGTCTGAAACAATTGAGGAGGAACTGGGCCTGACTGGAGCAACGGCAGATGACTTGGAAACGGAATACGTGAGAAAAATCTGTGAACACGAGATTGTTACCGGTAATACTCTACTATGCAAGCTTCGCCCACTGTTAGTCTGTATCTGCAGTAACCCTGCGAAATACAGTGACCCCAATTTACGAGCCGCTGCATCACTGGCTTTGGCTAAGTTCATGTTGGTGAGctctgagttCTGTGAAGCTCAtcttcaacttcttttcacgATCCTTGAAAAAGCACCTCAACCAACTATCCGAGCTAACACAATTGTGGCAGTTGGTGACTTGACTTTCAGATTTCCAAATTTGATCGAACCATGGACCTCTCATTTGTACGCAAGattgcgtgacgagtcaAGTCACGTTCGCAAAAACACATTGATGGTGCTTACGCATCTCATTCTGAATGACATGGTCAAGGTCAAAGGTCAAATCAGCGAGATGGCCACTTGTTTGGAAGACAAAGACGGCAGGATATCAGACCTGGCCAAACTGTTCTTTTTAGAATTGTCAAAGAAGGGAAATGCAATCTACAACATTCTTCCGGACGTTATAAGTCGCTTGTCCGACCCAGACTGTGGTATTGAAGAAGAACCCTTCAGAAATATCTTGAGGTATTTGCTATCCTTTATCCAAAAAGACCGCCAATCTGAAAGTCTGGTAGAGAAACTATGTCACCGATTCAGAGCCACCAAGACTGAGCGTCAGTGGCGTGATTTGGCCTTCTGTTTGTCCATGCTGTCATACAATGAGCGAGGAGTCCGCAAATTGCAAGAAAACTTCGCCTGTTTTCATGACAAGCTCGCCGAAGATGATGTTTACCAGTGCTTTCTGATAATTGTTAGTAAGAGCAAGAAATTCGCCAAACCAGAGCTTAAGGCATTGGTGGATGAATTAGAGCAACGCATAAACCAGTGTCACACCAAAGGCGTGGAGAACGAGGAGGACTATGAACGAGCTTCCAAAGCCTTAGGAGCAGCGAGTAATGGGGCCAACAAGACGAAAAGAGGCATCAACACCCCTGCGGGCAAAAAAATTGGAGCCCAAAAAGGACGGACACCGgcaacaaagaaaaaacgaCAAAAGAAAACAGTAGACAGCAGTGACGACGAACCCAGTCCCATGTCGCTCAAGACTCCGCACAACGCTCCTAGACCGCCGAAACCTGGGCGCACAAAGTCCACCCGTCGAAAGCGACAAATGATGTCCATATTTGAAAGTGATGACGAAGATAGCATTGAGTTATTTGACTTAGGTGAAGATAAGGTCGAAAAGGAGCTTAAATTGGACTCTGAAGATGACGAGAATGTCAGTCCAAATGCATCCCATAGAAGTGTAAAGAAAATCAGCAAGTCGCGTAAAGGAGTTGATTTACGAAGCGCGAGAAATCCTGGCAGACGGCGACAAGTAACCGATACGTGA

Transcript

BRAKERNUST00000012845

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YHY6	Condensin complex subunit 1 OS=Xenopus laevis OX=8355 GN=ncapd2 PE=1 SV=1
Q8K2Z4	Condensin complex subunit 1 OS=Mus musculus OX=10090 GN=Ncapd2 PE=1 SV=2
Q15021	Condensin complex subunit 1 OS=Homo sapiens OX=9606 GN=NCAPD2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004260 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12717 all species →	Cnd1	non-SMC mitotic condensation complex subunit 1	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007673 all species →	Family	Condensin subunit 1	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR026971 all species →	Family	Condensin subunit 1/Condensin-2 complex subunit D3	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR032682 all species →	Domain	Condensin complex subunit 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14222 all species →	CONDENSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030261 all species →	Biological Process	chromosome condensation	Interproscan
GO:0000779 all species →	Cellular Component	condensed chromosome, centromeric region	Interproscan
GO:0000799 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan
GO:0010032 all species →	Biological Process	meiotic chromosome condensation	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06677	YCS4, CNAP1, CAPD2; condensin complex subunit 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.