Gene detail

Detailed information of BRAKERNUSP00000012898.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044178037.1, arginine-glutamic acid dipeptide repeats protein-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000012898

ATGACGATGGGAGGAAGAAGTGAAACTGCTTCGGAGTTAAACAGCATGGCGAGTTCAGACGACAAGCGAGCTGAGCATAAGGGAAAGAAATTGACCTGCAAGACAAAAATGGAGGCAAACGAACCGTCCGTGTTGACATACACTTCCGATGAAAATGTTTATTACGAGCCCGGAGAGGTTCCGGAATCTGTTTACCAACTGCTAGTACAGGATAGAAACGCTGAAAATGGTTCAGGTGATCACATCTTGGAAGATGTGGCTGTCAAAGAGCGTGAATTGTTTATTTCAGATGCTACAGATGAATACCCTGCATCTGCAATCAAGGGAAAGTGCAAGGTCAGGCCGTTTGTTGAGATAGACTCCGTGAAAGGATACATAGAGAAAGATGATGCATTTTTCTATGTGCTTGGCTATAACCCAGAAACCAGACGTTTAGCTAATACCAAAGGCGAAATAAGAGTGGGAGGCAGTCATCAGgctACCCTCCCAGAATGTTGCTCTTTTCCTGCTAGTGGATTATCAGAGGAGATGGAAAAACCAAGAGAATATCTGGTTTGGAGCCCTTGTTTGGAGGACTATGAGCTCATGATGTACCTGCGTGCTGCAAGGAGCATTGCACAGTATGCTGGTATGTGCAGTGGTGGTTCACCAGAAGATGGTTACAGGGCTGTATCTCAGGATGCAACAACCAGCAATGCTCTTCAAGTGCTTCATCAGAATAATTATGATGCGGCAAAGGCTCTGCAAGCTTTGGTCAAGAAACCTTACCCCAAGGAACTGGAGAAGAAATGGTCGGAGGATGAAACGAAAAAGTTTGTGAAGGGACTGAGACAATATGGAAAGAACTTTTACAAGATTAAGAAGGAACTTCTTCCCCATAAAGAAACGGGGGATCTGGTGGAGTATTATTACACATGGAAAAAGACACCCTCAGCTCTAAGCTCAAGGCCACACAGACGCCGCAGACACAATGTTCTCCGACGAAAAGCACTTCCCAGATCATCCAAAAGCATTGTTAGTGAATTTGTCGACCTCAGTTCCTGCAGCGAAGACGATTATGACAGCGATGATAGTGATAGAGACTTAAGGTTATATTGCTGTCGCCATTGTTATTCAACCGAATCGCGTAGCTGGCATCATGGCAGCCAAAACAAGGTCATATTATGCGACGATTGCAGGATTTACTACAAAAAATACGGCAAGCTTCCCGTTCCAGATGAAACTCGCGAACCCCCACCGTATATGTTTAAAGTTGTTGTCGAGAATCAACGGAGAGATGAAGATGGCTACCTGGTGAATGGAAAATTGGCGTTACGCAGTCGAAGGGCGATACCTCCCGTACAGACAACACTACGGTCTGGACGAACCAAAGCTGCTAGTCCTGTTGAAGGTGTGATCGGTGAATCTACGGTAGGAGGCCGAAGATTGACGAAGATCACGAAGGCTCCTTCGCCATCGAGCGGAAGTACTTCGAGCACAGGAAGCAGTGGAGGAAAGGACAAACTGAAAAAGGGCAAATTGAAAAAGGGCAAGAAGCGTCAACGTGATCAATCACCTGGCGAAACAGCAGACAAGAGAAAGAAATCCCCCGCACAGGATTCAGACGAGGATGGAAATGACAATGCAAGTGACACCAGTAGCACCACCGGTGATAGGGATAGTGTAGTACCCGATCACGAGGCCAGCAGTGTGTGTAGCAATAGCAGCAACAATAACGATGATGCAGCTAGTAACCGCTCCTGCTCTCCAGTCGGGAGTCGACTGGAGGCTCCTGGTCTTCTTCCCGCCAATTTTAAGCGAGTGATTTCCGACGAAGAAGGACAAAGTTGCGTTCGCACTGACGTCATCTTCGTACATCCCGAAAAACCGAAGAAGGAGCCGACTCCTCGGGAAGCTACCTCTTCCAAAGAGTCGTCGACAAAAACTGAGGCAAACGAGTCTTTGTCATCCGACGTCGCTCAAATTCGTTCAAGTGCCAGCAAATCACCATACGATACACCGGCTACGATTACGTCACACTACGAATCATCACTGCGTATGATGGCCGGAGGACAGTACCATTTGTACCCACCAAATCTCCCACCGGGTATATCACCCCAGGGAATTCCCATACCTGGATTTCTACCCCAAGGTGTGGGCGTGGATTACAGGATGCCGCCATTTCACATGTTTCCTGGTGTCGGGATTATACCTGGCGGCGTTTCATCCCGCGAAAGTGCGGCCAAGTATGCCGAAGGTTTCGAGCAGTGGTATGCACCGTATCGAATGGCTCAATTACAGTCGGCAGCTCATCACGTCCCTGCGATCTCTTATCTCCAGGGGCAAGGACGAGCACTAGAACAGGGTGCTTTTGATTCGAGGAGCCCGGGCCACGAGGCCCTTGTCAAAGGAGGCTCAGGACGCGTTCTCGCAACTGATCCTGTATCGGATCTTCAATATTACGGACCTCAACACCACTCGCACTCGCACCTTCACACGCACTTTCATATCCACCCACACGAACAACAACAGCACCTGCAGAATCTACACGCTGCAGCTAATTTGTCAAACATTGACCAAGCTTATCTTCAACATCCGGGACTCTCTGCTTGGAGAAATCATCCGTCTCTATGGCAACATCCAGAATTGACGCATCTCCATGGTAACAGCGCGCGCGGCATTTTTCCTGAGGAGCTAGCGCATGTCCACGGGCTTGGTTCTACACCGATGGATCGACAATTGCAGCAACAGCTGCTGTTAAGTCAACAGACCAAGTATCATTCGCAGCATCAGCAGCAGCATATGTTAGCGCAGCATGAAGAATTCATGCGATACTGTAGACAACACAATAGAGCACATCAAAGACTTGAGAGCGAAAAAATCAACGATCACTTCCTAACGAGTTTGTTCAAGAAAGAACATCGAAATCTTCAAAGTCCGTCTCAGCTAGACAATGTGGTGAAAAAGAGTTTGGACAGTTCTGGATCTTATACGTCTCCTTCAAAGAAACCTCCAGTGACTATAGACTTGTCCGATGATTAA

Transcript

BRAKERNUST00000012898

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q62901	Arginine-glutamic acid dipeptide repeats protein OS=Rattus norvegicus OX=10116 GN=Rere PE=1 SV=2
Q9P2R6	Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens OX=9606 GN=RERE PE=1 SV=2
Q80TZ9	Arginine-glutamic acid dipeptide repeats protein OS=Mus musculus OX=10090 GN=Rere PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01448 all species →	ELM2	ELM2 domain	Family	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF00320 all species →	GATA	GATA zinc finger	Domain	Interproscan
PF01426 all species →	BAH	BAH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR000949 all species →	Domain	ELM2 domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR000679 all species →	Domain	Zinc finger, GATA-type	Interproscan
IPR013088 all species →	Homologous_superfamily	Zinc finger, NHR/GATA-type	Interproscan
IPR001025 all species →	Domain	Bromo adjacent homology (BAH) domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13859 all species →	ATROPHIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000012898.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.