Gene detail

Detailed information of BRAKERNUSP00000013119.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029179830.2, tetratricopeptide repeat protein 39C-like [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000013119

ATGAATCCGAACAGGAATGAATGTAAAGAGCTCAAAGAAGGAGGCTCCAAGTCGTCGGCCGCGTTTTGGGAATATCATGGTCTAGCAAGAGATGGGATAAATTTGCTTTTAAACAATGGGTTCGAGGAATCGCAAAAGCTTTTCCGGACTCACAGTGATGGCAGTCCACTCATGAGTGCTGGTTCAGGAATGGTGGACTTTGTGCAAGCCATCCTTACATTTGAAGATGATCAATTGGACAGAGCTCTTGAAAATCTAAAAAGAGCACAGAAAGTGTGCTATGTGGAGAACGCAGCAAAGAAGGGTCCACAAGTGGGGCAGGATGAGCAGCTTATGAGGCAGATTTTGTATGCTGATTGTGAACTTTACATGGCTTTGCTTACCTTCCTCAAACAAGGAATAACTGATTACATCAAAGGCGGGTACCTGATGCGAAGGGCATGGAAACTGTATGATAAGTGTTACTGTGAGATCAGTGCTATTGGTGGACCATTCTTGATGTGGGCTCCCGAGTTGAGAGGGGTTGGAAATGGTGCTGATCTGCCGCCTGATCTGGATTATGTAGAAGAAGCCCTAGATGAGTCAGAGTCGGTTGGAGTGGGTGTGGTCTCACCCCTGGACCCTGATGATACGGCATCCTGCACACTGGATGATCTCACTATCAGTGAGGAATCTGGTGAAGCAGTGAGTCTGGAGGCCCTCAAGCATCTCCAAGCTGCTGTGTCATGTGGCTATGGGCTGTTTCATTTGGCTATTTCCCTTGTCCCTCCTAAGCTCCTGAAGTTCTGTCATCTTCTTGGATTCTCTGGAAATAGGGATGTTGGAATACAAGCCTTAAACTTAGCAAGCCAAAGTGAAGATATGAAAGCTCCTGTGGCAAGGCTTACCCTCCTGTGGTACCATGCAGTGGTCAGGCCCTTTGTTGCACTTGACGAGGGAAGCAATGAGGAAGGTCTTGCCAACGCAACTGCCATCCTAGAAGAGTCCTGTCAGGATTATCCAAGCtcagctgtttttcttttcttcaaaggTCTTGTATCAAGACTTAAGGGTCATATCGGAGAAGCTCTTGATGAGTTTCACCAAGCAATGCGATATGCAGCCGAGCAAAAGGAAATAGCACTGATATGTCAGTATGAAATAGGTTGGTGTCACATGCTAAGGTTGGAGTGGGAGTACGCTCTTCCAGCATTTTTGAGGCTAAAAGAAGAATCTAAGTGGTCACAAAGCTATTATGCGTATCTCTGTGGAGTCACAATAGGTATTTTGGGTAGCACAACTGAAGCCCACGCACAATTCAAATTGGTTCCCAAATTTGTGAAGAAGAAAACGCCTTTAGAATTGTTCCTTGTTCGAAAGGTTTCATTTTACAAGAAATTTCCGCCCACCGAAGATGATTGTCTTCTCTTAGCGCTGGAAGTGTTGTACGTTTGGCGCGCATTCTACACATGTAGTTCCACTGTCCTCAATAAGGTTTTATCAGCATTAGAAGATTGTAACGTAAGCTCGCATCTGGCTCCTCTCAAATCCCTTGTCCAAGGGGCAGCCTGCAAAGCTCTCAAGAGAACTGATTTAGCAGTACAGTTTTTCCAAGATGCCATAGTGAAATCAGGTCGATCTCCGCCAGATCCTCACGTCCCTCCTTTTGCTTACTATGAACTTGGTGTTCTCTATGCGCAGGACGAAAAgTTTTTCCAAGATGCCATTGTGAAATCAGGTCGATCTCCGCCAGACCCTCACGTCCCTCCTTTTGCTTACTATGAACTTGGTGTTCTCTATGCGCAGGACGAAAAgTTGACAGAGGCTACAACATTCTTTTATCTTCAGATGAGCTCTAAAGGAGAACATTTTCTTAAAAAAGTCAAGGATAATTTCAGTGGATATGACTTTGAAAACAGACTCAGCTTCCGAGTACACGCTGCACTTGCAAGAATAGAGGAACGGAAAAAATCCGAAGTGAGTCGAGACCCACCCGACGGCAAATGA

Transcript

BRAKERNUST00000013119

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VE09	Tetratricopeptide repeat protein 39C OS=Mus musculus OX=10090 GN=Ttc39c PE=1 SV=2
Q8N584	Tetratricopeptide repeat protein 39C OS=Homo sapiens OX=9606 GN=TTC39C PE=1 SV=2
Q1LXE6	Tetratricopeptide repeat protein 39C OS=Danio rerio OX=7955 GN=ttc39c PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005961 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10300 all species →	Iml2-TPR_39	Iml2/Tetratricopeptide repeat protein 39	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019412 all species →	Family	Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31859 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24943	TTC39; tetratricopeptide repeat protein 39	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.