Gene detail

Detailed information of BRAKERNUSP00000014103.1 in Montipora cactus

Genomic Location: BLFO01001280.1:278524...337833
NR annotation: XP_044175282.1, LOW QUALITY PROTEIN: piezo-type mechanosensitive ion channel component 2-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERNUST00000014103

ATGACGGGTCGAGCCAGGGGAAGAAGCCGAGGTCGTGGTCGAGGTGGCGGCGGTGGTGATGCTCGCAGGCCTGGAGAGGGAGCTCAGGAGGTAACGCGAGAACAGGCGGCCCCAGTAGGACGTGGTCGAGCAAGAGGACCACCACCTGCTCAAGCCCCAGCTCCTGCACCGCAGAGACCAGCCCCAGCTCAAGTAGCTCCCCCAACCCAGGCCATGGCAGGAATGAGTGTGTCACAGGAACAGAGACCACCAAGAGGGTCTAGGAGCATCCCTGATGATATAGCTACTAAACCGGAACACATTGTTGACAAAAAAGGAGGAACTGGTGGAAAGATCGCACTTGTCACAAATCACTTCAAGTTGAAGACAAAACCCTCTTTCGGGGTCTATCAGTACAATGTCAGTTTCAATCCTGAACAAGAGTCTAAGAGGGTCCGAGTTGCTCTTTTGAAAAGCCAGACTGATGTGATACAGAGAGTACATGCCTTTGATGGTATGATGTTATACTTGCCCATTCGGTTGCCTGAAACCCACACAGTATTGAACTTGACTAAAAAGAATGGGGACCCTGTTCAAATGACAATTATGTTTACTAACGATGTTCCTAGGGAATCACCAAGCATGATGCAGTTGTTGAACATCATCTTTAGAAGAATTCTGAAGAACATTGGCATGCAGCAAGTGGGTCGCAACTATTACCATGTAAAAAGACCCATAATGATTGACAAGTTCAGGTTGGAACTGTGGCCAGGCTATACTACATCAATCATGCCATATGAAACAGATGTTCTTCTCTCAGCAGATGTCTCTCACAAAGTGCTAAGGCAGTCAACTGTATTGGAGTACTTATATGATTTATACGGTAGCACAAAGAAAGACTTCCATGGAGAAGCCTGCAAGAAGCTTATTGGACAAATTATTTTGACACGTTATAACAACAAGACCTATCGCATCGATGACATCAAGTGGGACCAGTACCCCTCAAGTACCTTCAAGGGGAGATTTAAAGGGGAAGAAAGGGACATCAGCTATTGCCAATACTATGAAGAGGCCTGGAGTATCACGTACCACTCTTGGTTGACCTTTGTTCTCCTCTTGTGGGCATGTCTTATCTGGATTACTCCCTTTGCCCGTTGGTTCTGCATGGTGTCATCGCCTGGCCTTGTCATCTATGCTGAGTTGCTTCTTCTTGTCCAGTATATTTATGGTCTCCAGTTGACAAATGATGAATTACCAATACAAGATCCAACAGGAACCTTCGACTACTCGGAGCTGGGGCTGAAGAAATGGCAATTTCCTTGTTTGCACTTGGGAGCTCAAACCCTTTTCACTTGGGTGTTCTGGGTGACCCTACGTCAACACATTAGAGAGAAAAAGATGAAGAGAAGGGAAAGAGAGAGTGAGGGATCCATGCCTCTGAGGAACCTTGCACACCCATTTCTGAAGGCCCTTAGGAAAATGTCTGTCGGCTCTGATGAAGGTGATGCTCTGGATCCTAAAGCAACTGATGATGCAAAGGCTCTCATGATGTGGGTCAAATCTGTCCTTGCAAAGTACTGGATACTCCTCTGTTGTGGTGCATTCTTATTGGTTGGTTTACAAAGTGAGGTGTCTGTTTACCAGATTGGCTACATGGTGATATTCCTCTTCATACTCATTTGTTATCAGatatcGATTGCAACTTGGAGGTTAATTCTGCGACCTTTGTGGTGGGTCATGGTGATCTATTCTATCTGCATTTTGTTATTAATCTACACATACCAGTTTGACAACATGCCTGTTTACTGGCATAATACTACTGGTCTCTCCGATCAATGGTTGTATAACCTTGGACTTCGTCAGCATACTCAAGCCAGTCTACTAATGGAGCTTCTTACACCCACTGCCTTCTCAATAGTCATTGTCATACAACTTCATTTCTTTCATCGCCCGTTCCTTGCTATGATCGATCTGCGTGTGCGACCTTCCTCCACATCGCAGCAGTCTTCAGCCAGGGGCGCCGTGGAACCTCAGACTGAACCATCAACCACTCGGCAAGATGGTGCCGGGACTGCAGCTACTCAAAGAGAGCCTAGAACTAGTACCCAGAAGTCTTTTCTGGTTGTGGCTCTCATCAAAGTAGTGAACTTTTACAATGATTTGACTGTGTTTCTGTGGAGAGTTGGCGAGCTACATATGCTAAAATTGGTAAATGTGACGCTGATTTGCGTTGTTCTCTATCAGGTGTGTGCTATCAATGCAGTCATCATCATTCTCCTGGGCATTTCGATGCCGTCGCGTGTTCTTCAAAGAGCTTTGTCTTACTGTTTTCTTATCTGGAGCTCATTGGTGATACTGAGTAAGATGATTTATCAGTTGCGGTTTGTGCAAGCAGACCTATTCCAGCACAATTGTACTGACCAGAATTTACCTCGGCCGAATACCGTTAATCACTTTATCAACAATGCATTATGGGTTGGGTTCTACAAAACGGACAACATATCGGACGACATCAAGGGATACCTTCTGATTGTAATTGTCATTGTGTTTCACGCGGTCATCAAACACCACCAGaaattgtacCGTTGGAGGAAAAACTTAAAAGAACCTGAATCTGGAATATTGTTTCCTGGAATAACTCGACCCGATGCGGATGAAGGGATTATCTGCTGTGTCAAGTACTTGTGCAACAAGTTTTTCTTCCACTTCGGCTGGGAGGTTTGCCTTGTCACGATCGTAATAAACATGGCGGTGCGTTGTGATATCACTTCCGTTATTTATGCCATTTGGCTTGGGGCCTTCCTAGTGCTGGGCCGACAGAACTCCTCTGTTGTGTGGCCCGTGTTTGTGGGCTTCATGGCAGTGCTCCTACCTCTTCAATACCTACTGGTTTTAGGATGGCCTCCCGCTTTATGTCTGGgTGATTTCTTCCAGTTGTTGTTTGCCTGTTGTCAAGAGAATGTGTTTTCTGTCGAGCGATTCCAGCGATCAAGCGAGCAAGCAACGCCAAGCACCGGTTTTGATTCCAACAGACGAAGCAGCCGGGCAACTACCACAACACCAGACTTCATGTGGAACATCACTTGGCTGGATTTCTCTAAGGTGTTTGTCTTTCAACACATGTACTGGGTGACATTGGCCGTTGTTTACATCACAGTGCAGAGCACGATCAGCATCTTCAACTTTGGTTTCATATTGTGGTGTTTCTTGTTCTTATGGCATGGCCAAGCTCTGTATCTTCAGCCACGAACTCGGTTGTTTAGATTGTGGAAGATATTCATTGGATACAACTACTTTACGCTTCTTGCTAAAGTTTGTTTACAGCTTGTCTCGTGCGTGTACGTGGACTACGTCAAAAGGCACACAGGATGCTGGTCTTTACAGCTGTTAAGCTTATTTTGTTTGAGACAAGGGGGATACAAAAACCAAACAGATTCAACCATCAGTGACTGCGTAGCGCCAGATGACACTGGCCTTGCTATGGACTGTGCGTGCTTTACATTTCTGGTCATACAATATCGTGTGTTCACATCAGATTATTTCAAACATGTTGTTCGGGATCATCGAGAGCAGTCTGACATGGCTAGCAGAGGAGCAGAATTAGTCGATGACCACGTGCGAACGCAGTTAGACGCTGTTAGACGTGAGGACAAGGGAAAAATGGATCGAATAAAGAAGTCGCtttacaaattgaaaaagaaacttgCCAAGCTACACCCGGAGGGAGAACAATACGAACCGCAGTCACATTATGAAGCAATCTATTCGGGTGATTACAAATGGTTTGAGAGCGAATCCGAGGACGAACTGGAGAGTGACTCGCCCACAGGAAGCCCAACTCATGACAGGACAGCCACTCCAAGTGAGACCAGCGGGCAGCCAAAAGAATCCAAGGAGAACAAGCGTAAAGGTAAAGCAACAGAACCCACAGGAGGGGCAGCCTCGTCAGgggatgatgaagatgatgatttCTTAGAAGTTATTGCTCCGGAATTACCTGCGGACGATGGGCACCCCGAAGGAGTCGAGGTTAAAATAAAGCGATGGTGCAGTTGGGTGTATTACTATATCGCCATCTCTGTTGATAAGGTCATAGACTTGTTGAATGATATCTCGAAAGACTACAGAGAAATTGCTGATCAATTGAAAAAAGAGCGAAGGGAGAAAAGAATCGAGAAGCTTCGCCGTGCGAAGTTTGGATATTCGGGTGCTCGGCAACGGCTCGGAGACGCGTCAGACCCTGAAATGGATACAAAGAGCATGACGTCTCGGTTGACGATGGAGGACGAAGACGCCTGGTTTGCCTCCAACCTGGATTTAGATGATGCTGACGGCAGCGCGAATTGGCGGAAATCGAACATGCGCATATCACGCCTCACCATAGCGTTCGTGTACGCTTTGCTGGCACACACTGATATCCTGTGCTATATGCTCATGATATTAAATCACATGGTGTATGCCAGTGTCTTGTCACTGCCTCTTCCTTTGTTGGTGTTCATGTGGGGCATGCTGTCCATTCCCAGGCCTACCAAGATCTTTTGGATCACGGTGATGACGTACACGCAGATTGTGATCGTGGTCAAGTACTTGTTCAAGTTTCAGTTCATTGATATTAATGACTGTAACCGCACTGAGGGTTTAGAGAAGAACAGTCCCATGTGTCCACCAAGGCTGATTGGCATCGAGCGAGATGGTCACGCCTCCGCTTACGATCTCTTGTTGCTGTTGGTTCTCTTTTTTCACAGATACTCCTTAAAGGTGCACGGTTTATGGCGAGATAAAACAAATCGGGACGAGGGAGATGACACTGACGATGGACAAGCTTCACCCATTTCTCCTCCAGGTCACTTTGCATCAGGTCACGGCGGTTCGATGATCCTAGAAAAATCACTCTCTACGGAATCTACGGTGTCGGCAACACACCAGTCAGAGGACGTTGAGAATGGCGAAGGAAATCACAAACACAAGAACAATGACTGTGAGCTGTGCTTCCCTGTGGTAACATTCTTTCGGCGTATTTCTGATCCTGAAGTCGGATCCGGTGCAGTGGATGTATACGCTATGATGTTTGCCTGTCagttcatcattttcatcatcatcgtatTCAGCTGGTCAGCGTTTTCCTCCCCTGAGcaagAGCCTCAAGCACCACAGTTTATGCAAATAATCGAGCAAAATGTGGTGCCGAAGACGTTTTTGTACATGCTGTTGTCCCAGTTCTTTCTCATCATCATCGACAGatttttataccTCAGAAAGTTTGTGATTGCCAAACTTGTCTACAATATTAGCTTGGTCATCTTGTTCCATATCTTCATGTTCTTCATCGTCCCACTTGTAACACAGAGGGCGTTCATTGAAAACATCCCAGCAATCTTTATGTACATTTTCAAGTGTATGTACTTTGGCCTGTCTGCCTATCAAGTTCGCAGTGGTTACCCTACAAGGATACTGGGAAATTTCTTAACCAAGAGTTATACACTCACCAGCGGTATTTTATTCCAAGGttttcagGCCATTCCCTTCCTGCTGGAGTTACGAAGTGTATTGGACTGGGTTTGTACAGACACAACGCTCACCTTGTACCATTGGCTCAAAATGGAGGATATTTATGCTAATATTTACGTTCTAAAATGCTATAGAGAATCGGAAAAGACTTGGGTCCAAGCCAGAGGACAGAAGTATTGGACAGTGAGTAAGTGGGGCTTGGGTGGCTTGCTTGTTGCGCTTCTGGTGATCGTCATATGGTTTCCTCTTCTGTTCATGTCGTACATCAACTCAGTGTACACCAGTAATCTTCCCCAAGACGCTACTTTCACGTTGTCAATTGGCGGATATCAGCCTCTCTTCAAAGTAAGCGCACAAGATACGTCTTTGCGCAAGCTGAGCGATAAAGAAATCGACATGATAAAGACAGAGCGGCCCGGTGGATTTTCGGAAACGGAGTGGGAATCTTTTCTACTGAACTACAAAGGCAGAAATACGGTTCTTCAAGTTAAAATCGTGGGTAACTCCAGCTCCATATGGACTATCAGTCCTCCATCACGTGACTTGATGACCAAGTATATTTCGGACAGCAATGTGAGCATGCTCTTTAGCTACGAGTTTACCAGGGAACCCCAGACGGCGCTTGCTCAGGAGACAATATCAGGTGTTACCCAGGTCTGGCTCGACAATAGAACCAAGAGTCAACTGGCAGACATGTTAAAGGGAAACTCTACCAAGGATGACGTtgtgataaaagatttgtttccaaGTTTCGTTGTGGTTCCAGCTAGCGGCTCGGTTAAAGCCGTCATGACCAAGCACAAATCAAACTATATGACGTGTCGCCTATGCATGCGCTCCAAAGGTAGTTTTGATTGGTGGGAACTGACACAGAAGTCGCCTAATCCGCTGTTTAGCGCCAAAGAGAATGTATTGGAGATGATCACGTTTAACGATCCCGTGCCGCCTCTTCACTTCTCATTTTTTACGAGCACAGGTATTATTGGTCTGTACGTGGGTTTCGTTTGGTTGGTTGGCAAGTTTGTCCGCTTGTTTTTCACTTCCATCTCTTACCGAATCATGTTCGACGAGATGCCAAACGTCGACAAAGTCCTGAAGCTCTGTCTGGACATCTTCATGGTGCGAGAAAGCAAAGAACTTGCGCTTGAGGAAGACTTGTTTGCCAAGCTCATGTTTCTGTACAGGTCGCCGCAAACGCTgataaaatggacaaaatataAGCGACAATGA

Transcript

BRAKERNUST00000014103

Protein

BRAKERNUSP00000014103.1

MTGRARGRSRGRGRGGGGGDARRPGEGAQEVTREQAAPVGRGRARGPPPAQAPAPAPQRPAPAQVAPPTQAMAGMSVSQEQRPPRGSRSIPDDIATKPEHIVDKKGGTGGKIALVTNHFKLKTKPSFGVYQYNVSFNPEQESKRVRVALLKSQTDVIQRVHAFDGMMLYLPIRLPETHTVLNLTKKNGDPVQMTIMFTNDVPRESPSMMQLLNIIFRRILKNIGMQQVGRNYYHVKRPIMIDKFRLELWPGYTTSIMPYETDVLLSADVSHKVLRQSTVLEYLYDLYGSTKKDFHGEACKKLIGQIILTRYNNKTYRIDDIKWDQYPSSTFKGRFKGEERDISYCQYYEEAWSITYHSWLTFVLLLWACLIWITPFARWFCMVSSPGLVIYAELLLLVQYIYGLQLTNDELPIQDPTGTFDYSELGLKKWQFPCLHLGAQTLFTWVFWVTLRQHIREKKMKRRERESEGSMPLRNLAHPFLKALRKMSVGSDEGDALDPKATDDAKALMMWVKSVLAKYWILLCCGAFLLVGLQSEVSVYQIGYMVIFLFILICYQISIATWRLILRPLWWVMVIYSICILLLIYTYQFDNMPVYWHNTTGLSDQWLYNLGLRQHTQASLLMELLTPTAFSIVIVIQLHFFHRPFLAMIDLRVRPSSTSQQSSARGAVEPQTEPSTTRQDGAGTAATQREPRTSTQKSFLVVALIKVVNFYNDLTVFLWRVGELHMLKLVNVTLICVVLYQVCAINAVIIILLGISMPSRVLQRALSYCFLIWSSLVILSKMIYQLRFVQADLFQHNCTDQNLPRPNTVNHFINNALWVGFYKTDNISDDIKGYLLIVIVIVFHAVIKHHQKLYRWRKNLKEPESGILFPGITRPDADEGIICCVKYLCNKFFFHFGWEVCLVTIVINMAVRCDITSVIYAIWLGAFLVLGRQNSSVVWPVFVGFMAVLLPLQYLLVLGWPPALCLGDFFQLLFACCQENVFSVERFQRSSEQATPSTGFDSNRRSSRATTTTPDFMWNITWLDFSKVFVFQHMYWVTLAVVYITVQSTISIFNFGFILWCFLFLWHGQALYLQPRTRLFRLWKIFIGYNYFTLLAKVCLQLVSCVYVDYVKRHTGCWSLQLLSLFCLRQGGYKNQTDSTISDCVAPDDTGLAMDCACFTFLVIQYRVFTSDYFKHVVRDHREQSDMASRGAELVDDHVRTQLDAVRREDKGKMDRIKKSLYKLKKKLAKLHPEGEQYEPQSHYEAIYSGDYKWFESESEDELESDSPTGSPTHDRTATPSETSGQPKESKENKRKGKATEPTGGAASSGDDEDDDFLEVIAPELPADDGHPEGVEVKIKRWCSWVYYYIAISVDKVIDLLNDISKDYREIADQLKKERREKRIEKLRRAKFGYSGARQRLGDASDPEMDTKSMTSRLTMEDEDAWFASNLDLDDADGSANWRKSNMRISRLTIAFVYALLAHTDILCYMLMILNHMVYASVLSLPLPLLVFMWGMLSIPRPTKIFWITVMTYTQIVIVVKYLFKFQFIDINDCNRTEGLEKNSPMCPPRLIGIERDGHASAYDLLLLLVLFFHRYSLKVHGLWRDKTNRDEGDDTDDGQASPISPPGHFASGHGGSMILEKSLSTESTVSATHQSEDVENGEGNHKHKNNDCELCFPVVTFFRRISDPEVGSGAVDVYAMMFACQFIIFIIIVFSWSAFSSPEQEPQAPQFMQIIEQNVVPKTFLYMLLSQFFLIIIDRFLYLRKFVIAKLVYNISLVILFHIFMFFIVPLVTQRAFIENIPAIFMYIFKCMYFGLSAYQVRSGYPTRILGNFLTKSYTLTSGILFQGFQAIPFLLELRSVLDWVCTDTTLTLYHWLKMEDIYANIYVLKCYRESEKTWVQARGQKYWTVSKWGLGGLLVALLVIVIWFPLLFMSYINSVYTSNLPQDATFTLSIGGYQPLFKVSAQDTSLRKLSDKEIDMIKTERPGGFSETEWESFLLNYKGRNTVLQVKIVGNSSSIWTISPPSRDLMTKYISDSNVSMLFSYEFTREPQTALAQETISGVTQVWLDNRTKSQLADMLKGNSTKDDVVIKDLFPSFVVVPASGSVKAVMTKHKSNYMTCRLCMRSKGSFDWWELTQKSPNPLFSAKENVLEMITFNDPVPPLHFSFFTSTGIIGLYVGFVWLVGKFVRLFFTSISYRIMFDEMPNVDKVLKLCLDIFMVRESKELALEEDLFAKLMFLYRSPQTLIKWTKYKRQ

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92508	Piezo-type mechanosensitive ion channel component 1 OS=Homo sapiens OX=9606 GN=PIEZO1 PE=1 SV=4
Q9H5I5	Piezo-type mechanosensitive ion channel component 2 OS=Homo sapiens OX=9606 GN=PIEZO2 PE=1 SV=2
Q0KL00	Piezo-type mechanosensitive ion channel component 1 OS=Rattus norvegicus OX=10116 GN=Piezo1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002090 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF12166 all species →	Piezo_RRas_bdg	Piezo non-specific cation channel, R-Ras-binding domain	Family	Interproscan
PF15917 all species →	PIEZO	Piezo	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027272 all species →	Family	Piezo family	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR031334 all species →	Domain	Piezo non-specific cation channel, R-Ras-binding domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR031805 all species →	Domain	Piezo domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47049 all species →	PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008381 all species →	Molecular Function	mechanosensitive monoatomic ion channel activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22128	PIEZO1_2, FAM38; piezo-type mechanosensitive ion channel component 1/2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.