Gene detail

Detailed information of BRAKERNUSP00000014339.1 in Montipora cactus

Genomic Location: BLFO01001295.1:1097265...1111711
NR annotation: XP_044173189.1, SEC14 domain and spectrin repeat-containing protein 1-B-like isoform X1 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERNUST00000014339

ATGGCCTCGCAGAAGATGAGGGAAGAATTAGCGCGACAGTCTGGCTTCGAAGATATATCTTTTGCCACTCGAAGCTATCGTCCAGAATATGCTTCAACGCCAGACATACGAGGAGTGTACAGATCACAAAGATGGATTCGAACTTCTGAGATCGAACCAACTTTACGAGCTAAGCTGGCCTTCACATCAGGTGGTAAGGACAGACAAGGTCGCAGTATCTTGACAATACCAGCTGGAAAGACTGAAGATTTAAGCGTCGATCAACTTGGAGATACACTCTCCTATTTAACTCAAATTCCGagGGATCAAACAAGAAGTCTCATCTACACTGTTATCATTGATTTACGgggttcttcatggaaatcTGCGAAACCTCTTCTCAGAAGCTTACAGGACACAGTTCCTGACAGGGTACACAATGTGTATATCATCAAGCCAGATGCATTTTGGGAGAAGCGACGCTCAGGAACTGGACTCAAAAAGGAACAatccagtgtcatttttgaaACAACACTGTTGTCCTCAACAAGTAAACTTCATGAATTTGCTGAAGACAGTCAACTCACCCAGGAACTTGGCGGCACATTACCGTATGACCATAACAAATGGATTGACACTAGATTGGAAATTGATAAGCTGTCAGATGATGCTGTTTCGTTGAATGAGAAGTTTGATGAGCTAGAACAACACCTTGACACCCACCGGCTGGGGAGTGATATCGTAGAGACTGGTGACCTCTTACAAGAGCATGAAGCTAAAAGAGGATTGCTGGATAATGTTGCACAACCTTTGATCCAGAGAGGAGAACAATTAATGAGATCAATAAAAGCAAATGAACCACCTGTTCCACCAAGCTTGAACTTTGCTGGTAGTGTGGCAGCCATGCCAAGCCAAGAACGCCAACAGGTTGAGAGCATTGTAAGGTTGCTGACACACAGATACAATCAGCTGTTGGACATGTGGGAAAAACGGTGGAAAGAACTGATGCAGTGCATGGATCTTCGGGATTTTGAAGCTGGGTATAAGAAGGTGATTGATTGGGTTCTTGGGCCAGGAGAGCGTTATTTATCAACATCAAAAGATATTGGAGATTCAGTAATCAGCTGTgaaattttaagaaaagaaCACGAAGAATTTGAGCTGAATGCAAGGGAGGTGATCAACCATTTTGCACAGGTGCGTGAGCTTGCTAAAAAGATGCTCCATGAGAACCACTATGCCTCAAAAGATCTCAAAACGCAGAAGGAATTTTTGGACAGAGGCTGTCGGGCTTTTGCCATGCGTATGAACAGGAGGAGAGATGTCATTTTGGCGTCATTGAAGTTCCATAAGGGTGCTGGAGATtgTTCCGTTCATTTAGACGACTTGTTTGAACTGCTTTGCACGGAATCTGTTCTTTTGTATGACTATGAAACCGCAGAAAGGATGCTGAAAACACTAGAAGAGAAAGCTGAAGccgTAGTTGCGTCGTCTGAGGAGACATTGCGAGACGCATTGGCCGTGCAGGAACTGATGAATAGTCCAATTGTTGACATGCGCGGAGAAGACGTCACTCCAGACTACAGTAGGGGTATTGCGCATGTTCGCATGACGCTTGATGAACTCAGAGAGCGGAAGCTGCGGACGGACGAACTTTGTGATGTGCGTAGAATCAAACTACAACAACTGCTGCAGCTAAGACAAAGTGAACGGGATGCTGACCAGGCAACAGAATGGATAAGTCAGCTACGAGACGCTACAGAACATAATCTGGGTGATGTTGGGCGGAACTCTGAGGATGTAGACTCACTGCAGAAGGAGCATGAAAAACTGGAGGCTACCGCTAGGAGTACCTATGAATATGGACGACAATTTCTTCAAGCTTCTTTAGTGCTGCGCCGCACTTGCCGTTATGAACTGACACCAAACTATGAGATGGAAGAAAAGTTAAACAAGGCGTGGAGCGAATTTTCGACCGCGATGGCAGAGCGAGGGGCCAGGTTATCCGTGGCGCTTATGTTTCATCGGAGTGCAGAAAAGTTCATACAAAAGATAGAAGAGATCAAATCAACATACATGACCGAAGACTTCTCAGACAACCTCACCTCCGTAGAGGTGGAAGAAGAAGTCAGTCGACACACAGATACCAAACATGCTATCGACAAAGAACACGCCGAGGCAGTTGCTATGGGAAAAGCTTTGATTGACAGAATGCAATTATCCCCTCTCTATGACGAAGAGGGAGCGCCAAATCGTCCTCCACATCTCTTAGAAGAAACTCTATTGAATTTGGAAGAAACAAAAGTTGCTTGGGACAGAGTTTGGAACGACAGATATGAGAGACTTCATCACTGGTTGAAACGTGGAGATTACGAACAGCAAGCAAGCGAGGTAATTATCCATACCAATTGCCTTTACAGACTTAACTTAACTTATTGA

Transcript

BRAKERNUST00000014339

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GNM9	SEC14 domain and spectrin repeat-containing protein 1-B OS=Xenopus laevis OX=8355 GN=sestd1-b PE=2 SV=1
Q5M7P4	SEC14 domain and spectrin repeat-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=sestd1 PE=2 SV=1
Q80UK0	SEC14 domain and spectrin repeat-containing protein 1 OS=Mus musculus OX=10090 GN=Sestd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001183 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13716 all species →	CRAL_TRIO_2	Divergent CRAL/TRIO domain	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR001251 all species →	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR036865 all species →	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46607 all species →	SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0010314 all species →	Molecular Function	phosphatidylinositol-5-phosphate binding	Interproscan
GO:0032266 all species →	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0043325 all species →	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0070273 all species →	Molecular Function	phosphatidylinositol-4-phosphate binding	Interproscan
GO:0080025 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000014339.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora cactus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora cactus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →