Gene detail

Detailed information of BRAKERNUSP00000014846.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044164523.1, FAS-associated factor 1-like isoform X3 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000014846

ATGTCTTTGGCCCCAAAACTGGATGAAGTCTCCGATGTTATTACAAATGCAAATTTGGACATTGCCTGCATAACAGAGACCTGGTTGCGCGACCGCATTCACGACAACATTGTCAGTTTTCCCGGGTATAATTTAGTGAGAAGAGACAGGGTAGACGTAATCCATGGAGGAGTTTGTACCTACATGAAGAAAGGGCTGAAGTATACCATTCTAGAAGATCTATACGATGATAAAATTGACCTACGACCTTCGCCCCTCCCTAGGGGATTATCTTCTATAATCATTGCCAATGTTTACCATCCACAGACAGACAAAGGTGTTTCGGATTCTGAGATCCTGCATTGTCTGTACAATTCAATGTCTACAATTGAATCGCGATTTTCGAACGGTGGAGTTTTGATCACAGGGGATTTTAACAGGCTCGACACTTCGAGATTTAGGAACGCTTTTAAGCTAAAACAAATTGTTAAATTCCATACTCAAGGAAATCAGACTCTAGACCTTGTTTTGACCAACATCAAAGAATTCTACGAGGAGCCAATAAAACGCCCAGCCTTCGGTCTGTCAGACCACGCATCTATTGAACTCCAGCCCTTGTTTCGCTGCAAAAAACAACCATCAAAACAATCCAGCATCACAAGAGACCAGCGGGAAAGTTACAGGGTCGCACTGAGCTCATACTTGGAAAAAGTTAACATCACCGACCTTGTAAAGAACAAAGATACATGTGATGAGAAAGTGCAGATAATGGAAGAAGCTATTATTTCTGGTATGGACGCAATCATGCCCCTGAAAGAAAATTTGCCGGTTGCTGTTCCAGTCGATGACCATTCTCCTGTTACTGACCAGTCCTTAATTCCATCTGTGGCTTCAGTTTCTGTTGGAGATGTTGTTGGGAGATCAATTCCTGTTCAAAACCCTCCAAGAAGAATCAAGTTCTTAATTGAGTGGAGAGATCGCACCATCCCTGTTGTGTTAGATGACAATGAGACATTAGGCACAATAAAACGAATGCTGGAGATGCAACTTGACATACCTGTGAGTCAACAAAGCCTCCTGGGATGGCCAAGCCACCTGCAGCTAAGTGATGATAGTGTTTTAAGTACCTTAAACTTACGAGAAGAGACAGCTCTAGTTCTAATCAATCGTGCAGTGACAAGGACACCTAAAGAGAGTCAGCCTTGTATGGTGAGGAGAACCATGAATGGTGAAATCAGCTCAGCTTCAAAAAGCAGTAACTCCTTTGAGAAAATCATGTTGAACATACAGTATGGAAGCAGAGAGTTTAACCTTCCTTATGTTGTCACAAAGACAGTAGGAGAGgtGAAAGCAGATATCCTCTCTTTATCAGGCATTCCTTGTCGGCATCAGTGTTGGACAGGCTGGCCAGTTGATGTTACTGATGATATGCGCCTTCAAGATGCTAACTTATCCTTTCCAGTGCACAGTTTAACAGTGGGAAAAAGTGAAAAGGAAAGATCACCAGATTATCATAAGGCCAGTACCTCAAAAACAAGACATACTGATGTAGAAATGGATGTAAATGATGACAGTAGTGACAATGAGGATACATCTTTTCaagttgatgatgatgagatGTTTTGCGACATTCCAGCAGCAAGGAGACAAATAAATGAAATGCAAGCAATCAAGGAATCTGGAGGTGCTTCTGCTAAAGAGagAAGACCTCTGCTCATTTATCTTCATCATGATGGCAGTATATTAACAAATGTATTTTGCAGCCAACTTATTTGCTCCGAAACAATTGTGAACTACATCAGTAGCAATTTTGTTGTCTGGGCTTGGGACATGACACATGATACAAATAGGACAAGGTTTTTAGATATGGTGATGCAGCATTTTGGTAGCGTGGCAGCAAGCACGGTTCGTGGATTTGGGGCTGAACAGTATCCCCTTCTCATAGTTGGGTTAAAAAACAGATCAGCCATGGAAATATGTTCAGTTATTCAAGGTTCAGTGACCCTTGATGAACTTATGACTGGACTTATGAGTGCACATGACACATTTCAACAAGCAATGGACATTGAAATCAGAGAGGAGGAAGAAAGAGAAGCCAGGGAACTCGTCAAGAAAGAGCAGGATGAGGCATACCAGGCCTCACTTCGTCAAGACAAAGCAAAGGCTGAAGAAAAGAGGAGacaggaagaagaagaaatactTTCAAAAAAGCTTCACGAAGAGCAAGCTTTGCACGAAGCTCAGCTTAAAGAGGCGCAACGGTTGTCTTTGATGGATCACCTTCCTTCAGAGCCCGCGTCCGACTGCACAGCGCCTGTTTCCAACCTTCGGTTTAGACTTCCTAACGGAGACACTCTCACAAGAAGATTCCTCGCTACTAATCCACTTCAGgTTGTCTTGACCTTTGTTCAGACAAAAGGATATCTGGACAATGAATATAAAGTGGTGACAAACTTCCCTCGGAGAGATCTTTCTGCGCTGGATACAATGGAATCCTTACAGGCGCTTGGGCTTTATCCACAAGAAACTATTTTTGTTGAAGAACGCTGA

Transcript

BRAKERNUST00000014846

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UNN5	FAS-associated factor 1 OS=Homo sapiens OX=9606 GN=FAF1 PE=1 SV=2
P54731	FAS-associated factor 1 OS=Mus musculus OX=10090 GN=Faf1 PE=1 SV=2
Q924K2	FAS-associated factor 1 OS=Rattus norvegicus OX=10116 GN=Faf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006444 (this species only)
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21021 all species →	FAF1	Fas-associated factor 1	Domain	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00789 all species →	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR049483 all species →	Domain	Fas-associated factor 1/2-like, UAS domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR050730 all species →	Family	UBX domain-containing protein	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR006577 all species →	Domain	UAS	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR033043 all species →	Domain	FAS-associated factor 1-like, UBX domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322 all species →	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000014846.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.