Gene detail

Detailed information of BRAKERNUSP00000017320.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029194195.2, uncharacterized protein LOC114960111 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000017320

ATGGCATTACGATTGCATAACACAAGGCGTCTAGACGACAACACGACCTGTTTCAGTTTCATCTTTGAAGACTTTTCAAGCATTGGAGCAAGTGTGTACTCGAAGCCGTTCAATTTCGCCTCGTCAAGGTGGCGTTTGCAAGGCGGTATCAAAGGAGGAAAGTTCGGTGTGTTCTTAAGGTGGCTCGGCGGTGGTCAGTACAATGATAAAGTAAAATGCAAGATTCGATGTACATTAGAAGTTATCAACAACGGGGATCCGTCTAAGTCTGTGAGAGCTGGGAACGCAAACGACGTTGACGAGTTTCCTAAAGTTGGGTTCGGAGTCGGCTGGAGTTCCTTGATCACAACAGAGGAAATCCAGAGGCTCGATTCAGGGTTTTTGGATGAGAACAGTTTGTTCGTTGAGATCAAATGTTCACCTGTGAATATTGTTTTTGAAGACAAATTGGTTATAAATGTGTCATCTCGCACAAGCTATGTCACTAGCTCAAAGTTTTCTTTGCACGGGGAAGAATGGTATCTGGTACTATACCCGAAAGGAGAGCCAAGAGACAACAACGAACCAAATGCGGACTTTGCGGCTGCATACCTGCATAGGGAAGAGCCTTCCATGTTAAGATTCAAAGCCACCTACTCCATTTATGTGCGCGGAGGTCGAGAAGTACAAGTGACTCATCATTTCTGCGACAGCAATGCCAGCACAGCGTTTGGTATCGAGAAGTTTGTTCGCAGCAAAGATCTTAAAGCTATCTCTAAAGGAGGCATGGTATCAATCGGTGTAAAGATCACAAGCATTgatccttattattattttggtttcGACACCACAAACTGGTCTCCACCCAACAACATGGGCAATGAGTGCTTCATTGATGATGCGTACCCTTTAGCATTCAAACCCGGATCCAACGATAAGAAAACGCTGGATTTTAGCTTGATGTTCGATCCAAAGAGCAAGCACGCAGATTTAGAAGATAGCGCGTATTACGTGAAGATTCAGTGGAGTgttcgtttgttttgctttaaggATGACAACAGAAGCGTTACGGGGAACTCGTGGGATGTTCCCGGCAGAAGTGCATTCTGTTTTAGTCAAGATGAGATGACTATGAACACTAGTTTGGAATTGAACGAGGTATTAAACCCTTACAGCCCGTACTTGGATGATGAGAAACATTTGTGTGTTCAGTTGATGATTAAAAACACCAACGAAGTTTACGATCCATTATTGCTTAACTCGGACAAACACAGCGTCGCAAAGCTGAGGGAGATGAACGCGCAAACAAAGGCAGCAGTTGAAAAGTTTTGGAAATTTCAATTGGAAAACGCGACAGCGGAGAAGGATCAGCTTCTGGCAGATAAAGATGAGGAATTAGCAGCCAGAGAAGAGGAACTAAAGCAAAAGGAGCAAGCGATTCAAGCTCTGGAAAAGGAGATCAGTGAAAGCAATGAATATCTGGCTGAGATCGAGAGCACGGTAGACGAGATTGATGGCAAGAAAGTTAGCAGCATTAAAGATCTTGTGCAAGAAGCTCAACCGGAGGAGGAACAACTTCAAAAACAGCAGGAAGTTGCCGAAAAATTGAAAGCCTTCATGATGGAACACTTGCCATTCACTGTAAGCCGTATTTCAGTGGTTGGTAGCGCTGGACAGGGTACAAGCATCAAAGGATACCAGGAACTCGACTTAGCAGTCTTTGTAAAAGACCTTCCCAGAACCGAACACAAGAGTTGGTTGCCCGCaatagttttcacttttaaaacaCTCTTGAAACAAGAAGGATCCAGATCAGCTGAAAACAGTGATGACAAGCAACTCACAGCCACCAAATTGCCACCATGTTCAGACTTTGTGACAACTCAGACAACTGTTGAGTTCAAATGCAACAATGTCAATGTTGTGGTGATGCCAATCAACGACTGGGAGCCAATAGGAGGCTTTGAAGCTTTATACAAACAGAGCATGAGTCAACCAGCAGATGGACAGATGTTTTATAATGTGGCTGTCTGCGAAAGACAAACTGAGTTCATTTCCAAGCAGAATCCAAAGTGCAAGGATCTGATCCGGATTGTTAAGAACTGGACTAACACTGTttcctggcgcaatacctcatCAAAACCGAGTCATTACTTACTGTCATTATTGGTCACAGCTGCTTATCAAGTGGTCAATGAGGGAGGTGAAACTGAAGCAGTAAGAGCAGACAAGGATGTGTTTTTGGAATTGGCAGACATGGTTGGTGATGAATCATTAGAAGTATTTTGGAATGAGTATTACCTGGCAGACGACTATCCACGTGAACATCATCCAATCGCATTTAAGCTGCCAATTGTTCAGGACCCTGCCATTCCAACACATAATGTTGCATCTGTTGGACTTGAGGACTGGGCCCAATTTAGGAGAGAGCTGTCAAAATGGGTTGCAAAGTTGACTCTTTAG

Transcript

BRAKERNUST00000017320

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002254 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10421 all species →	OAS1_C	2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus	Domain	Interproscan
PF00917 all species →	MATH	MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR043519 all species →	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR018952 all species →	Domain	2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11258 all species →	2-5 OLIGOADENYLATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001730 all species →	Molecular Function	2'-5'-oligoadenylate synthetase activity	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0060700 all species →	Biological Process	regulation of ribonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000017320.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.