Gene detail

Detailed information of BRAKERNUSP00000017405.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029191984.2, homeobox protein SIX1-like [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O46339	Homeobox protein homothorax OS=Drosophila melanogaster OX=7227 GN=hth PE=1 SV=1
A6NDR6	Putative homeobox protein Meis3-like 1 OS=Homo sapiens OX=9606 GN=MEIS3P1 PE=5 SV=2
Q54VB4	Homeobox protein 9 OS=Dictyostelium discoideum OX=44689 GN=hbx9 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000714 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan
PF16878 all species →	SIX1_SD	Transcriptional regulator, SIX1, N-terminal SD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR031701 all species →	Domain	Homeobox protein SIX1, N-terminal SD domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10390 all species →	HOMEOBOX PROTEIN SIX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000017405.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.