Detailed information of BRAKERNUSP00000017466.1 in Montipora cactus

Genomic Location: BLFO01001552.1:1373373...1374581
NR annotation: XP_015756031.1, PREDICTED: protein farnesyltransferase subunit beta-like [Acropora digitifera]
Species Montipora cactus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P49356Protein farnesyltransferase subunit beta OS=Homo sapiens OX=9606 GN=FNTB PE=1 SV=1
Q8K2I1Protein farnesyltransferase subunit beta OS=Mus musculus OX=10090 GN=Fntb PE=1 SV=1
P49355Protein farnesyltransferase subunit beta OS=Bos taurus OX=9913 GN=FNTB PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006763 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00432
all species →
PrenyltransPrenyltransferase and squalene oxidase repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008930
all species →
Homologous_superfamilyTerpenoid cyclases/protein prenyltransferase alpha-alpha toroidInterproscan
IPR026872
all species →
FamilyProtein farnesyltransferase subunit betaInterproscan
IPR001330
all species →
RepeatPFTB repeatInterproscan
IPR045089
all species →
FamilyPrenyltransferase subunit betaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11774
all species →
GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005965
all species →
Cellular Componentprotein farnesyltransferase complexInterproscan
GO:0018343
all species →
Biological Processprotein farnesylationInterproscan
GO:0003824
all species →
Molecular Functioncatalytic activityInterproscan
GO:0004660
all species →
Molecular Functionprotein farnesyltransferase activityInterproscan
GO:0008318
all species →
Molecular Functionprotein prenyltransferase activityInterproscan
GO:0018342
all species →
Biological Processprotein prenylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K05954FNTB; protein farnesyltransferase subunit betaEC:2.5.1.58
Prenyltransferasesko01006deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora cactus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora cactus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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