Gene detail

Detailed information of BRAKERNUSP00000017619.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044173360.1, LOW QUALITY PROTEIN: tyrosine-protein phosphatase non-receptor type 13-like [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000017619

ATGAATAGACAGCAAACATACTCTGTTTTTGTTGCCTTGAATgaaagaaagattgctgaaggtttAAATACTTCAGACCGGGAAATTTGTGTTATTGAATTCACTAAAGAGCCTGGGAAGCTACTAGGTATAACTGTTCTTGGTGGTGAAAATTCCAAGAGGCTTGACCGTGGAATATATGTGAAGTCAGTTACTGAAGGAGGGGCAGCCTGGAGAGATGGCCGATTGAAGGCTGGTGACCGGATTTTAGCTGTGAATGGCCAGAGTTTGGAAAGAGTTACACATGAGCATGCAGTTTCCGTCCTCAAAAATGTCACCAGTCCAGTGGAACTTAAGGTGTCTCAGAGTGCATATAATTACTCTTCGATTGATCTCTCCAATATTCCAAATGCAACTTCAACAAATGAGGAGCCAGATAGCCTTGAAGTGAAGCCACTGACATCAGCTGAACAATACTCGTCACCTGATGCTGAAAATCATCTCAACCCTGAGAGAAGCCAAGGAGAGTCACAGCCTTCACCTTTTTCATTCCCTCCTGAGGATGAACCGGTGACCATGATTTCAAAGTCAATTCCACCGTCATTAGTCAAGGTGGCATCTTCAAGAAGTAGGCTTTCAGAAGAAGATTCACCTAACAAATTGGAGGACTCTAAAATGGAGAAGCCCAATCTGAGGTCAAGAGGTCAATCCACACCTATAGAAGCTAATGTTTTGCAAAATCCTCTTCTATCTGCTACATATCCACCAATCTCTAGAGGCATTTTACTCTCCCATGCAGAGTCGTCAGAGCGTTCCACTGAGGGGTCCTTCAGTGAGGATGAGAGTGATTTTAATAGCAAGGATCTATTGCCAgagAAGGCTTTTGTGGTTCATTTACAAAAAAAGGACGGAAGTCTTGGTTTAAGTGTTAGTGGGGGGATAAACACAAGTGTCAAGCTAGGTGGTATCTATGTAAAATCTATCCAACTAAATGGCCCTGCAGACTTGGATGGTGGAGTGGCTATTGGTGATCGCATCCTTGCTGTTAATGGCGTTAGTTTGATTGGGGTCACACACAAGCAAGCAGTGGAAACCATAAAGGTGGCACCTCAAAGGACAAGGCTGGTTTTAGATCGCTCCGTTCCAGTCAATATTCCTAAGTCATCTGTAAAGAAGACAAGACCCCACCCCTCTGATAAACCATTTGTGGTGGAATTGTTGAAAGGGGTTGGAGGACTGGGACTTAGTTTGGTTGGTGGCAAGGGAGCTGGGGAGGAGCATGGAGGTTTTCTGAGAATAAAGAAGATGTTTCCAGGACAACCAGCAGCTGCAAGTGGCAAACTTCAGATTGGTGACATAATTTTGCAAGTGAATGGAAATGATATGCAAGGTGTTACTCACCAAGGAGCCATAAATCTAATTCGTATGGGGCCTCAGGAGGTCAACCTCTTAGTCAAAAGAGATCCATCTTCAATTCCGTCATCACTATTGCAAAGATCTGGATCGAATGCCAGTGACATAGACCCTGCCCATATTCTTGCTGACATACAGAGCAAGCTGAAAGTAGACACTCCGTTGCAGAGCAAAGAGTCATTTGAGTCATCAGGAAGTGAACTGCCATCTGCTAAACCGGACTCGTTAGATCTTGGGGATGAGGTACCGAAACTTCAGAAAGAAGCACCTGTTGAAGTGCATGTTAGTTTGAGGTCAAGCTTGTTATCTGATGATTCAGTGAAACACCCTACCACATCCCAGTCCAGTCACCCTGGCCTTGTCAGCAGATTATCAGAACCAGTAATTATGGTTACTAGTGGACATAATCCACTTGCGGCATCTAATTCTCTTCCTAATACCATCTTGAAACTTAGCCGACAAGAAGCCTTTCGACAGACAAGTCAAGAAGACGAAGATCCTGCTATGCTTTCTCTGGCCGTAGCTCCTTTGGCTGAAGATGAATCTAGTGATGTTGAAGACTCAAGGAGATCTTCGTCTATCAATATAACTACGCCAGATCCTTCTGTATATGATGAAGACAGTGTAAAGGGTCTTATTGAAAAGCTTTCATCTGTGGAGTCAACAGAGGAGCAGGAGGATGCAGTTGGCCTAGAGGGAACATCTTTGGCCAGTGTTGAGCCTGTAATGCCTGTTTTACAGGATGAAGTCTCACCTACTCCTTCATCAGATTCAAGTGAAAGTGATGTGGAAGAGATACCAGTGGATACTGATATGGATCAAGTGATTGCGCTTTCATCTGACGTGGAGAGAAATGGAGAGTCGATAAGTCTGACTCCACAAGATGAGATACTGCACATAGAATTGGTCAAAGCTTCAGGAGGCCTTGGCTTCACCTTATCTGGTGGAGCAGATACAGTTGGAGGTTGTTTTGTGAGAGATATTGTTGGTGGTCCTGCTAAGGAAGATGGGCGTCTACAACCAGGGGATCAAATACTGGCTGTGGATAATCAGGATATTTCAACAATGAAACACATGGATGCAGTGAATGTTTTACGGTCCACAAAGCAAGTTGTTAAACTTGTGGTGCTGAGGAGACCAACTGGGTTTGTTGGATCCACTCAGTCTGGGCCTGTTGAGGTGCTAAATCTTACCAGAACAACTCAAGGCAGAATTGGTCTTCTCATCAAAGAGGGTGAAGACCAGAGAATCTATGTTGAGGATGTAGTCCCAGGAGAGCCAGCAGCCACTCAGGGTGATCTTCTGCAAGGAGATAGAATTTTGGAGATTAATGGCATCAAGGTTGATGGCCTTGGCTTTGTAGCAGCTCGTCAGCATCTAGATGCAGCCAGACCAGTTGCCACATTACTTGTGGAAAGACGTCCACGTCTTTTAGAGTCCAAATATGCCATGGCTCAACAGACAGATTCTGCACCTTTGAGCCCTTCAAGGTTTGTAGATGTGCCAGGTTCAAACAACGTAGATACCAGTGATGAAGAAGACAATCAAGacattgaaattaaaaaagaaatagaggaaGAAGATGAGGACTCTCAGGGTCAACAGTTTTGCATGAAGCTTGAGAAAGGTCCTCGTGGATTTGGCTTTAGTTTGGTCGCTGCACCAACATTTTACTCAAATgCTCAAGGGATCTTTATCAAAACCATAAGCCCTGGAAGTGTAGCAGAAAGTGATGGTAGATTAAAAGTTGGAGACCAGATACTAAAAGTCAACAATGAAGATGTCCAAGGATTAAGTCATGCTAAAGTGATTGGAATGCTGCGGAAGATTACGGGCACAGTAGAGCTGGAAATTAAAAGACCATCCAAACTGTACCTGGCAGATTCTGAAATCAGTCCTCCTCTAACATACACAGCACCATCCGAAAAACATCTTGTTGCACCCTCCTCAAGAGGATCACTTGAAAGAGCAAATCACTCTGTGGACCTCGATATCACCTTGGAGGACAAGGATAAAACACTTACAGAACCTACAAAGGTTGAAGATGAGGATGGTGTGTCTGAACTTTTGAATGCCATATCAGCGGCAAATGAAAACACTTCACCACCCACAAGTCACATCCAATCCAAACCTGTGCTACGTAAAAGAGATACAGATGCTGTATTGACTTCCCTGTTGGAGACACTGCAGCCGCCACCCTCACCTCCCGAATCAGTACTGTCTGTGGATCCACATGAATTTGATTCTCAGTGGGAGAGCAATTACAGCGACAGTGATGCTTCTCCTAATGtcaaaaaaaataaaccttGGCAAGAATTAAGGAGTTCTTACCACGACAAGAGAAGCTTCAGTGAAACTTCCAGTGTTATGCACTCAGTGAATCAACCTAATTCAGAGGTTATGGAGCTTGATTCTGCAACAAATGACATCACAGTCAGAACTAAAACAATTGATGATGgaagtggtgatgatgatgacgatgactaTGTAAAtatggatgatgatgatgatgtgttTGGCATGTTACGTGACAACAGTCAGCTTGTGATAGGCATGCTGAACAATAGTAATTCTCTGCCAGTTGTTACTGTGGATAGCAGTTATGGTGGAAACACAGAAGTGCATTCATCGAACACCTCTCTTGAAGCTGTTGACACACATTTCAATGTGCCACCACCCATTCCCACTTCTCCTCTTCCCTCAGATGATGACAATCCACCTGTTAAACCACCTCCAAGGAGGGAATCACTTCCCAAGTTTTCGGCAAATAGTTACATGGGGGATTCCCATTCTGCACCAGTGATGAATGGATCAATTGATAGACACGACAGGTAA

Transcript

BRAKERNUST00000017619

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12923	Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens OX=9606 GN=PTPN13 PE=1 SV=2
Q64512	Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus OX=10090 GN=Ptpn13 PE=1 SV=2
Q68DX3	FERM and PDZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=FRMPD2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002606 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR052074 all species →	Family	Non-receptor Tyrosine-protein Phosphatases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46900 all species →	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16175	SCRIB; protein scribble	-	Human papillomavirus infection	ko05165	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.