Gene detail

Detailed information of BRAKERNUSP00000020030.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044178886.1, uncharacterized protein LOC114977832 isoform X2 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000020030

ATGATTGCAACTATCATTGAACGTATACTACTCACCATCATCCATTTTTATGCCCACCGTGATCACATGTTCCTGGTGCAAAACTGTGCATGCCCCTTGGTTTCACTGTCTCAAGAACCCTCAATGTCAAGTGATGACACACAGCCGTCAGCCCATGATCACTTATCAAGTCGTTACATCGTCAGTGAGGAACATCAGAAAGCTAAAGACCAGTTTATGGagaaggaaagagaaaatgCAAGGATGGAAGCAAAGAGGAgaaaattaatggaaaaaaGAGCCAGGCAGGAGGTTCTCCAGCAGATAGCAGAGGACAAGGAAAGACGCGACAGGAAACATGGTCGAAAACAGCCCTCTCCTCAGGTCGCAGCTCAAACATCAACTACCTCGGTGACCAGAACATCCAATCAGCCCAACAAAAACCAGTGTTTGCTTCagATTAGAGCTCCAAATGGACTTCTAACCAGAGAGAAATTTTTGTCTAATTCTAAGCTTGAAGAGGTCCTGACCTTCATCTGCAATCAGAATGAGCTGAATTCTTCTGACTACACACTTTTGCAGCCATTTCCTTCCAAGGTATTCAGTGATGCTGATATGACGTGCAGCCTTGTTGATCTTGGACTTTCACCTACAGGTTCacttgttttgaagaaaaaggaaactggACAACCGCCAACGTTAACTGGTCATAGATCCACAGAATTAAGTGCCTACCTTCACTCTGCACAAACGTCAAATAAGGAAGCGGGCAGACCTGAAGATGATGAACACAATGTAAATGCAACTTCTGGCAGAAATGATAGTGACGATTATGATattgaggatgatgatgatgttggtGGCGGTGGCGGTGATGATAATAGCGATAATGCTGGTAACGAGTTGATGTCAGCCCTACCAGTGTCAAACAGAAACCCGCCACCTGAGTTGGACCGTCTCCCAGATATTGTGGATCCAAATGTTTTACGAATAGGAGGAAGGAACAATGTTAGAGTAAGAGAGCATGGTCACTCTTGGGGCGGTGGAGTTCGACTTGGTGCTGTTCAACATAATCCACATGCTATTGATCCTGTTCTAAGAGCGCAGACACCAGGGGAGTCAGCTGTCAAACGACTGGAGATGAGACAACATTGGCAACATCAATCACAAGCTGGTCCCAGTCAGGATAGTCATGAAGATCAGCCTCTCCTTCACCGTAACGTTCATCGCCTTGAGGACTTGTTAATCAGTCACATATGTCATCGTCTTCCTGGACACCAACACCCTATCACCAGCTTGGGCATGCTACCCCATGAATTGTGTGACAAGATCTTGGGCCATTTAATGAAGAACAAAACCCTTGTGCCTAAAGCAATGCAGGCTTTTCTCTCCTGTGGTTTGCGGCATATAAAGTTTGATTGCTATCCTCTGGTAACCAACGAACTTCTACTAGCACTCAGaCTTCATAGGCACTTGATACACCTTAGCTTGAGGGCTTGTCCTTTAATCACTGATAAAGCACTTGAAGCTGTTGCAGAACTTCCATCACTGGTGACATTACTACTAGACATGACAAAAATAACTGACAAAGGTGTGTGTCACTTTCTTGCAAATGCAGCATGTTCTCCTGACTTGGTGCACTTGAGTTTTAATGGAACCAGCATCACAGATCAGAGCTTACAAGCTATGTGTGGCCTCAAAGCTCTCAAGATTCTGTCGATTGGAAATACAAAGATTACATCCTTGTGCACTGTTCAGCATTTACTCCTGTTAGAAAATTTGAATGTGTCCCACACATCAATAGATGATGATGGCTTAGTTGCTGTGGTGAATCACCCATCACTTGTGTCGCTTAGTCTTCTATCAACAAATATTTCTGATGATGGATTACACCATCTTAGAGGACTGCCGTTGGTAGCTCTTGACTTGTCAGACTACATTCATGTCACAGATACCGGAGTCAATTCCATAGCAAACATGACAAGGACCAGGATTTCCAACAAACAATTGAACCAACTGGTGTTGCCATCGCTGAGCCAACTAAATCTTGATTGGACCCGAGTGACAAGCGACTGCCAAGTTTTACTTACAGgTTGTCCGTCACTCAAAGCCTTGAGAACAAAGAACTGTGCTCCACCATCAGAAGATTCTGAAGACTCAGATGATGAACAAACATAA

Transcript

BRAKERNUST00000020030

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TXH9	UBX domain-containing protein 1 OS=Caenorhabditis elegans OX=6239 GN=ubxn-1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005973 (this species only)
Ubiquitin family	ULD\|UFD\|UBX · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789 all species →	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46340 all species →	UBX DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031397 all species →	Biological Process	negative regulation of protein ubiquitination	Interproscan
GO:0032435 all species →	Biological Process	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0036435 all species →	Molecular Function	K48-linked polyubiquitin modification-dependent protein binding	Interproscan
GO:1903094 all species →	Biological Process	negative regulation of protein K48-linked deubiquitination	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000020030.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.