Gene detail

Detailed information of BRAKERNUSP00000020645.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029208986.2, U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000020645

ATGGCGGATGCCACAGCCAGGTCACTGCAGTATGAATATAAAGCGAACTCTAATCTTGTACTGCAAGCAGACCGCTCTCTGATCGAACGTCGTGGTCGTGATGAGGCTACAGGCGAGGTTGTATCTCTCGTCGGACATTTGGGAGGAATCAAGATGGGGGACAAGTACCAGAGAACTAAACCTCCAGTGTCAGAAGAGAAAAAAGCTAAACGCCAGAAGATAGCTGAACGAGAAGAGTTCACTAAAAGCAAAGGTAGCAGTAGCCTTTTGTCAGAAGACTCTTCAGACTTGGCTGGAGTGAGGTATCGACCAAAGACAAGAGAAACAAAATCTACTTATGAGGTTCTTCTAAGTTTTATCCAGGCTGCCATTGGAGATCAGCCACGTGACATTTTGTGTGGAGCTGCTGATGAAGTCCttgtagctttaaaagatgacaaGATGAAGGATAAAGAACGGCAGAAAGAGATTGTATCTTTGCTCGGAGTAATGCCAGATGAGAGGTACGCCCTGCTGGTAAATTTAGGGAAAAAGATCACAGATTACTCTGTTGACCGGAGCTTGCTTAACGATGACGATGTGATAGATGAGACTTATGGAGTGGCTGTACAGTTTGATGAGGAGGAAGAAGAGGAAGACAAAGACTTTGATGAAGTTATGGATGAATCTGGTGATGAAGCTGAGGGGGTGGAGGCAGATACAAAAATGACTCTTCAGGGAGGGTTGGAAGATGAAAGATCTCAAAGATCAGGCGATAATCTCCATCCTCGAGACATTGATGCCTTCTGGTTGCAACGAGAGCTGAACAAATATTATGCAGATGCTGAAGCATCAAGATCGAAAACAGAAGAAGTGCTTGAAATCTTGAAGAGTGCCAAGGATGAGAGAGAACTTGAGAACAAAATGATGCTGCTCTTAGGCCATGATAAATTCTCTTTTATTCGGCTGttacgtaaaaacaaaaacatggtTTTGTACTGTACATTGCTAGCAACAGCTCAGAGTGCAAAGGAGAAAAAGGAGATTGAGGAGAAGATGAGTTCTGATCCTGATTTAGCATCGATCCTGCATGCACTGACAGAGACAGAACAAGAGGACTTGATTCAGGAGGAACGTGCACGGAAAGCAGCCAATAGAAAAGCCAGGATTGCAGCTGACTTGGACGCTGTCGAGTCTGACCAGACACGGGGGAGTCGAAAAATACTGGACCTGGAAGATCTTTCCTTCAAAGATGGAAGCCATCTTATGGCAAACAAGAGATGTCAACTTCCTGATGGTTCATTCAGGAAGCAGAGAAAGGGTTATGAAGAGGTTCATGTGCCAGCATTAAAACCTAAACCATATGAGGCAGGAGAGgAACGTGTTCCCATTACAAGCTTACCAAAGTATGCCCAGCCAGCCTTTGAAGGTTATGATGCTTTGAACAGAATCCAAAGTAGactctgtaattctgctcttAACACTGATGAAAATCTGTTGCTCTGTGCTCCGACTGGTGCGGGTAAGACAAATGTGGCTTTGTTGACAATCTTGAGGGAGATCGGCAAGCACATCAATCTTGATGGAACAATCAACCTGGAAGAATTTAAAGCCATTTATGTTGCTCCCATGAAATCTCTTGTGCAGGAGATGGTTGCCAATTTTACCAAGAGGCTCAGTACATATGGGATAACTGTATCAGAATTGACTGGAGACCACAATATGAACAAGGAACAGATTAACAGTACTCAAGTGATTGTCTGTACTCCAGAAAAATGGGACATTATTACACGCAAGGGAGGAGAGAGAACATTCACCCAACTTGTAAGACTCGTCATCATTGATGAAATTCATCTGCTTCATGATGATCGTGGGCCAGTGCTGGAGTCACTGGTTTCACGCACAATCCGACAGATAGAGACGACTCAAGAACTGGTTCGTCTGGTGGGATTGAGTGCAACTTTACCAAATTATGAAGATGTGGCAACCTTCATGCGTGTCAACCCTGCCAAGGGTCTGTTTTTCTTTGATAACAGTTTTAGACCTGTTCCACTAGAGCAGCAGTACATTGGTGTTACAGAAAAGAAACCAATTAAAAGACTGCAGGTGATGAATGATATTGTGTATGAAAAAGTTATTGAACATGCTGGAAAGAACCAAGTGCTTATATTTGTACACTCCAGAAAAGAAACAAGCAAAACTGCTCGAGCCATCAGAGATTTGTGTCTTGAGAGGGACACATTAGGACTTTTCTTGAGGGAAGATTCGGCAAGCACAGAGGTTCTAAGAGCTGAAGCTGAACAAGCAGTCAATCTGGAGTTAAAAGATCTTCTTCCCTACGGCTTTGCTATCCATCATGCTGGCATGACGAGGGTTGATAGAACTCTGGTGGAGGATCTTTTTGCGGACAGGCATATACAAGTGCTGGTTTCCACAGCAACATTGGCATGGGGTGTGAACTTGCCTGCACACACTGTTATCATAAAAGGAACACAGATTTACAACCCTGAAAAGGGTCGCTGGGTTGAGCTTGGTGCATTGGATGTGATGCAGATGTTGGGCCGTGCAGGTCGTCCTCAGTATGACAGCAAGGGTGAAGGCATCTTGATAACAAGTCACAGTGAGCTTCAGTACTATCTCTCACTTATGAATCAACAGCTTCCCATTGAAAGTCAGTTTATTGGCAAGTTGGCTGACAACCTCAATGCTGAAATTGTGCTGGGAACAGTGCAGAATGCAAAGGAAGGTGTACATTGGCTAGGTTATACCTACCTTTATATCCGGATGCTGAGAAATCCATCACTCTATGGTGTAACTCATGATGAAATTGAGAGGGATCCCCTTCTTGAGCAGCGAAGAGCAGACCTTATTCATTCAGCTGCCACACTGCTGGATAAGAACAATCTTGTGAAATATGACAAGAAATCAGGAAACTTTCAGGTTACAGAGTTGGGTCGCATTGCCAGCCATTACTACTGCACGCAAGAAACTATCGCTACTTACAACAACCTGCTGAAACCAACACTGAGCGAGATTGAACTGTTCAGGGTCTTCTCACTCTCGTCAGAATTCAAGTACATCACAGTTAGAGAAGAAGAAAAGCTTGAACTGAACAAGTTACTGGAGCGTGTCCCTATCCCAGTCAAGGAGAGCATTGAAGAACCAAGTGCTAAGGTCAATGTTCTTCTTCAAGCCTACATATCTCATTTGAGGCTGGAGGGGTTTGCCTTGATGTCAGACATGGTTTATGTTACACAGTCTTCAGGTCGGCTAATGAGGGCAATCTTTGAGATTGTCCTGAATCGTGGATGGGCTCAGTTAGCAGACAAGAGTCTCAGTTTGTGCAAAATGATTGATAAAAGAATGTGGCTTTCAATGAGTCCATTGCGTCAGTTCAAGAAGATCCCCATGGAAGTAATCAAGAGAATTGAGAAGAAAGAATTTCCATGGGAGCGATATTATGATCTGGGAGCAACAGAGATTGGTGAGCTTGTACACATGCCCAAAATGGGCAAGACACTGTACAAGTTTGTACATCAACTACCAAAGATGGAGCTAGCAACACATATTCAGCCTATCACAAGgtCTACTCTTAGTGTCGAGTTAGTGATCACACCGGATTTTCAGTGGGATGAAAAGGTTCATGGCAACTCTGAAGCTATGTGGATATTTGTGGAAGATGTAGACAGTGAAATCATCCTGCACCATGAGTATTTCCTGCTGAAGAGCAAGTTTGCATCTGATGAGCATACCttgaagttctttgtccctgtTTTTGAGCCACTTCCTCCTCAGTATTTCATCAGAATTGTTTCTGACAAGTGGCTTGGATCTGAAACCCAGCTTCCAGTTTCATTCCGTCATTTGATTCTGCCGGAAAAGAACCCTCCCCCCACTGAATTGCTGGACTTGCAACCTCTTCCTGTGTCTGCTCTGAGAAACCCTGCCTTTGAAAGTCTATACAAAGACAAGTTTCCCTACTTTAACCCAATACAGACGCAAGTTTTCAACACATTGTGCAGTTCGGATGAGAATGTTCTGATTGGTGCCCCTACCGGCAGTGGCAAAACCATCTGTGCCGAGTTTGCTGTGTTGCGACTTCTTCAGCAGATATCTGACTGTAGATGTGTTTATGTGACTCCTCTACAATCCCTGGCTGACCAGGCAAGTTGCATGGAACCTTTACATCAGTTTGCCTTCTGTTACATGTAA

Transcript

BRAKERNUST00000020645

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Q6P4T2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
F1LNJ2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18149 all species →	Helicase_PWI	N-terminal helicase PWI domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF21188 all species →	BRR2_plug	Pre-mRNA-splicing helicase BRR2 plug domain	Domain	Interproscan
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR041094 all species →	Domain	Brr2, N-terminal helicase PWI domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR048863 all species →	Domain	Pre-mRNA-splicing helicase BRR2-like, plug domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050474 all species →	Family	Helicase Hel308/SKI2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47961 all species →	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000020645.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.