Gene detail

Detailed information of BRAKERNUSP00000020712.1 in Montipora cactus

Genomic Location: BLFO01001798.1:2353027...2375883
NR annotation: XP_029208986.2, U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

BRAKERNUST00000020712

ATGTTGCGGAGAGTGAGAAGGAAGCTCTACTTTTGGCAACGAATTGATGCAGTGGGACTTGTGATTGGTTGTCGCGCGGTATCgcggcaaattaaaaaaaaacaacaaacatggCTGACCGAGAAAGAGGTTTATGCAGACTGGCAGAGCAAGTTTGGTCTTCAGTTGGGTAAGAATGTGGTGATGTTAACGGGAGAAACGAGTGCAGATCTAAAACTTCTCGCTAAGGGTAACGTGATCGTGAGTACACCGGAACAATGGGATGTGTTATCACGGAGATGGAAACAGAGGAAGAATGTGCAGAATGTACACTTGTTTATTCTAGATGAAGCTCATCTAATTGGCGGAGAATCAGGGGTAGGGAGAAATGGTCTTAAAAATGTAGACGTGGACGTTTCTCAGTGGCTCGGCGTCAGTGCCACAggcttatttaattttcatcCCAATGTCAGGCCTGTGCCACTCGAACTACACATACAGggTTTCAACATCACCCACACAGCATCTCGTCTGATTGCCATGACAAAGCCCACCTACCAGGCGATCGTGAAGCATTCCCCAAAGAAACCTGTGATCGTTTTCGTTCCCTCGAGAAGGCAGACCAAACTAACTGCACTGGATCTGCTGACTTTCTCCGGCGCTGAGAATGATGCGCAACGATTCCTTCATTGCACAGAGGAGGATCTCCAACCTTTTATCAGGCGTTTAAATGACAAGACGCTCAAGGAGACCGTGGGATATGGTGTGGCCTATTTACACGAGGGTTTGTCCGATACCGAAACGAAGATCGTGGAACAGCTGTTCAATTCCGGTGCGATACAGGTGGTGATTGTGTCACGCAATCTATCGTGGGCGATAAACATGAGCGCTCACCTTGCCATAATTATGGACACACAGTTCTATGAAGGAAAGATTCATGCTTATGTGGACTATCCTGTTACCGATGTCTTACAAATGATTGGTCGCGCAAACAGACCTCTTTTGGATGACTCTGGAAAGGCTGTGATTCTCTGCCAGGCATCCAAGAAAGAATATTTCAAGAAATTCTTGTATGAACCGCTTCCTATTGAGTCGCATTTGGATCACTGCTTACACGATCATTTTAATGCTGAAGTGGTGACAAAGACAGTTGAGAACAAGCAGGATGCTGTTGACTATCTAACGTGGACTTTTCTGTACCGTCGAATGACCCAGAACCCAAACTACTACAACTTACAAGGTGTTACCCATCGTCACTTGTCAGATCACATGTCAGACATGGTAGAGAACACTCTCAATGACTTGAAGCAATCAAAGTGTCTGGCAATCGAAGATGAGATGGATGTCTCACCGTTGAATCTCGGAATGATTGCAGCTTACTATTACATAAATTACACAACCATTGAGCTTTTTAGCGTGTCGTTGAACGCTAAAACTAAACTGCGTGGTTTGATCGAGATCATCTCATCCGCTTACGAGTACGAGAGACTTCCCATAAGACATCACGAAGACACTACCTTAAAACAGTTGATGAATCGTGTGCCTCATAAAGTGGCGAACCCAAAGTACAATGACCCTCATGTCAAGACGAACCTTCTTATCCAGGCTCACATGTCGCGGATGCAACTTTCAGCTGAGATGCAGTCAGATACCGAAACAATACTCGGCAAGGCAATGCGTCTCGTTCAAGCTTGTGTCGATGTGTTGAGTAGTAATGGATGGCTTTCTCCCGCCCTCGCAGCCATGGAACTGGCTCAAATGATAACACAGGCCATGTGGAGCAAAGACTCATATCTCAAGCAGATTCCTCACTTTACAGCTGAAGTCGTAAAACGATGTGTTGATAAGGGAGTGGAGTCCGTGTTCGACATCATGGATTTGGAAGACGAAGAGAGAAACAAACTTTTGCGTTTGGACGATAATCAGATGCAGGACGTCGCAAGATTTTGCAATCGCTATCCTAACATTGAATTGTCGTTTGAAGTAAATGACAAGGACAACATCACGGCGGGCTCTCCCGTGAATGTTATTGTTGACCTGGATCGAGAAGATGAGCAGCCAGGCCCTGTGATTGCACCGTTCTTTCCCCAGAAACGCGAGGAGGGCTGGTGGCTAGTTGTTGGTGACACCAAGAACAATGGGCTAATTTCCATTAAGCGTTTGACGCTCCAACAGAAAGCCAAAGTCAAACTTGACTTCGTTGCTCCAAGCTCACCTGGGACGTATTCATACACACTGTTTTTCATGTGTGACACTTACATGGGCTGTGACCAGGAATATCCATTCAAAATAAACGTGGGTGAAGCTCTAAGTGGGGATGAGGAGAGCGGCGATAGCGACGCAGACGACTAG

Transcript

BRAKERNUST00000020712

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Q6P4T2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
F1LNJ2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001411 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24075 all species →	SEC63 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000388 all species →	Biological Process	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000020712.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.