Gene detail

Detailed information of BRAKERNUSP00000020712.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_029208986.2, U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000020712

ATGTTGCGGAGAGTGAGAAGGAAGCTCTACTTTTGGCAACGAATTGATGCAGTGGGACTTGTGATTGGTTGTCGCGCGGTATCgcggcaaattaaaaaaaaacaacaaacatggCTGACCGAGAAAGAGGTTTATGCAGACTGGCAGAGCAAGTTTGGTCTTCAGTTGGGTAAGAATGTGGTGATGTTAACGGGAGAAACGAGTGCAGATCTAAAACTTCTCGCTAAGGGTAACGTGATCGTGAGTACACCGGAACAATGGGATGTGTTATCACGGAGATGGAAACAGAGGAAGAATGTGCAGAATGTACACTTGTTTATTCTAGATGAAGCTCATCTAATTGGCGGAGAATCAGGGGTAGGGAGAAATGGTCTTAAAAATGTAGACGTGGACGTTTCTCAGTGGCTCGGCGTCAGTGCCACAggcttatttaattttcatcCCAATGTCAGGCCTGTGCCACTCGAACTACACATACAGggTTTCAACATCACCCACACAGCATCTCGTCTGATTGCCATGACAAAGCCCACCTACCAGGCGATCGTGAAGCATTCCCCAAAGAAACCTGTGATCGTTTTCGTTCCCTCGAGAAGGCAGACCAAACTAACTGCACTGGATCTGCTGACTTTCTCCGGCGCTGAGAATGATGCGCAACGATTCCTTCATTGCACAGAGGAGGATCTCCAACCTTTTATCAGGCGTTTAAATGACAAGACGCTCAAGGAGACCGTGGGATATGGTGTGGCCTATTTACACGAGGGTTTGTCCGATACCGAAACGAAGATCGTGGAACAGCTGTTCAATTCCGGTGCGATACAGGTGGTGATTGTGTCACGCAATCTATCGTGGGCGATAAACATGAGCGCTCACCTTGCCATAATTATGGACACACAGTTCTATGAAGGAAAGATTCATGCTTATGTGGACTATCCTGTTACCGATGTCTTACAAATGATTGGTCGCGCAAACAGACCTCTTTTGGATGACTCTGGAAAGGCTGTGATTCTCTGCCAGGCATCCAAGAAAGAATATTTCAAGAAATTCTTGTATGAACCGCTTCCTATTGAGTCGCATTTGGATCACTGCTTACACGATCATTTTAATGCTGAAGTGGTGACAAAGACAGTTGAGAACAAGCAGGATGCTGTTGACTATCTAACGTGGACTTTTCTGTACCGTCGAATGACCCAGAACCCAAACTACTACAACTTACAAGGTGTTACCCATCGTCACTTGTCAGATCACATGTCAGACATGGTAGAGAACACTCTCAATGACTTGAAGCAATCAAAGTGTCTGGCAATCGAAGATGAGATGGATGTCTCACCGTTGAATCTCGGAATGATTGCAGCTTACTATTACATAAATTACACAACCATTGAGCTTTTTAGCGTGTCGTTGAACGCTAAAACTAAACTGCGTGGTTTGATCGAGATCATCTCATCCGCTTACGAGTACGAGAGACTTCCCATAAGACATCACGAAGACACTACCTTAAAACAGTTGATGAATCGTGTGCCTCATAAAGTGGCGAACCCAAAGTACAATGACCCTCATGTCAAGACGAACCTTCTTATCCAGGCTCACATGTCGCGGATGCAACTTTCAGCTGAGATGCAGTCAGATACCGAAACAATACTCGGCAAGGCAATGCGTCTCGTTCAAGCTTGTGTCGATGTGTTGAGTAGTAATGGATGGCTTTCTCCCGCCCTCGCAGCCATGGAACTGGCTCAAATGATAACACAGGCCATGTGGAGCAAAGACTCATATCTCAAGCAGATTCCTCACTTTACAGCTGAAGTCGTAAAACGATGTGTTGATAAGGGAGTGGAGTCCGTGTTCGACATCATGGATTTGGAAGACGAAGAGAGAAACAAACTTTTGCGTTTGGACGATAATCAGATGCAGGACGTCGCAAGATTTTGCAATCGCTATCCTAACATTGAATTGTCGTTTGAAGTAAATGACAAGGACAACATCACGGCGGGCTCTCCCGTGAATGTTATTGTTGACCTGGATCGAGAAGATGAGCAGCCAGGCCCTGTGATTGCACCGTTCTTTCCCCAGAAACGCGAGGAGGGCTGGTGGCTAGTTGTTGGTGACACCAAGAACAATGGGCTAATTTCCATTAAGCGTTTGACGCTCCAACAGAAAGCCAAAGTCAAACTTGACTTCGTTGCTCCAAGCTCACCTGGGACGTATTCATACACACTGTTTTTCATGTGTGACACTTACATGGGCTGTGACCAGGAATATCCATTCAAAATAAACGTGGGTGAAGCTCTAAGTGGGGATGAGGAGAGCGGCGATAGCGACGCAGACGACTAG

Transcript

BRAKERNUST00000020712

Protein

Uniprot

Uniprot term	Description
O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
Q6P4T2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
F1LNJ2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02889	Sec63	Sec63 Brl domain	Family	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004179	Domain	Sec63 domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24075	SEC63 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000388	Biological Process	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan