Gene detail

Detailed information of BRAKERNUSP00000023232.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044171771.1, uncharacterized protein K02A2.6-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000023232

ATGGCGACCTACGGGAAAATAGGCGAATTCAAAGAATCGGAAGAATCATGGACCCAGTATGTAGAGCGGTTGGAGCAGTATTTCCTAGCGAATGAGGTGGAAGATGTGGGGAAACGACGAGCAATTCTACTCAGTGTTTGCGGGAGTAAAACGTACGCACTTGCGAGGGATTTACTTCAACCAGCGAAGCCAGCGGAGACAACTTTCAAGAAGATTGTCGACACCCTTGAGAAGCACTTTTCACCGAAGCCGAGTGAGATAGTGGAGCGTTACAAATTTCACAGCCGAAATCGGAAAGAAGACGAAGGAGTTGCAGCATACGTGGCCGAGTTGCGTAAGCTAACTGAACATTGTAATTTTGGCGAGTCGTTACCAGAAATGCTACGAGATCGCAGTGTTAATCAGGTCGACGCTCAAGACAAGAACGGAACTAAAGATACGAAAGATCGTCGTCCAGATTCAGAGTGTTATCGTTGTGGGGAGAAACATGAAGCTTCAGCCTGTCGATTCAAAGATGCTCAGTGTTTTAAATGTGGGCGAAGAGGGCACTTAGCCAAAGTGTGTCGTGGCGAGAAAAATTCGAAGAAGAAGACGAGCAAAGGAACCGATTCCGGAAATCGAGAAGGTAAACAAACCGGTTGGCGAGACAGCAAGCCAGGAAAGGGGAAGAAGAAGCAGCCAACACATTTAGTGGACGAAGTCTCCGGCGCAGAAGGTGTTTATGCAGCGACTATGTATCACATTCGCGGGCAAAGCAAACCTAAGGCATTTGAAGTAACTGTGGAACTTTGTGGTGAGCCACAAAAATTGGAGATAGACACTGGCGCGACCAGAAccgtgttgaatgaagaaacgTACAACAAGTTACGTGACAAAGTTGAATTGAAGAGTTCGAAGGCCATATTAAGCACATACACAGGAGAGAAAATACCAGTGTCAGGTGAAGTACTGATTCCTGTCAAGTACCAAAATCAACAGCATAATTTACCAGCCCTGGTGGTGATGAGTCCTGGACCCAATCTACTTGGAAGGGACTGGCTTCAAGTGATTAAGCTTAACTGGAACAGTATTTTTAGCATCCAAGAGGGCAACCCTCAGCTGCAGAAGATCCTAGATGCACACAAGGACGTTTTTGGCGAAGGACTGGGTACACTAAAGGGCACAGAGGCTAAAATCTATGTTGACCCAAATGCTCCACCCAAGTTCATGAAGGCACGTCCTGTACCATATGCTCTTAAAGTGAAAGTCGAAAAAGAACTCGATCGATTGCAGAGCGAAGGCATAATATCTCCTGTAGAGTTCACAGAGTGGGCGGCACCTATAGTTCCAGTGGTGAAACAAGACGGATCAGTGCGTATTTGTGGTGACTATAAGTGTACGGTTAACCAAGTCTCAAAGCTGGATAATTATCCAATCCCCAAGACTGAGGACCTGCTTGCCACACTAGGTGGAGGCAATAAATTCACCAAGCTGGATATGTCACAGGCATACCAACAGTTATTATTGGATGAAGAATCGAAGAAATTCACTACAATCAACACTCACAAGGGACTCTATCAATATAATAGACTGCCCTTTGGGGTTTCATCAGCGCCCGGAATTTTCCAGCGTACAATGGAAAATTTATTGCAAGGCATCCCCCATGTTGTCGTGCGAGTTGATGACATCTTAGTCAGCGGCAAGGATGACCCAGATCATCTAGCCAACCTGGAAGCAGTGCTTCGTCGGCTCTCCACAGCAGGATTAAAGCTACGTTTGGCAAAATGTCTGTTCATGCAACCTGAAGTCACGTACTGTGGGTATGTAATCAGTGGTGATGGCATTCAACCTGTGGCGGCAAAAGTTGATGCAATTAGGAATGCACCGGAGCCAAAGGATGTCAGTCAGTTACGAGCGTTCCTGGGCATGCTTAACTACTATCATAGATTCTTACCTGACGTTGCAACCATCTTGGAGCCCCTACACCAGCTCTTAAGGAAAGGATCAAAATGGCAGTGGCAAAAGGAACAGCAGGAGGCCTTTGCAAAATCTAAGGAACTGTTGCAGTCAGCTGAGCTTCTAGTACATTTTGACCCAACTAAGGAACTTGTACTTGCTACTGATGCTTCAGATTATGGTGTGGGAGCAGTCTTATCTCACAAAATGGAAGGAGGAACTGAACGTCCAATAGGATACATGTCCAGATCTCTGAATGGGGCTGAAAGAAATTACTCTACCTTAGAGAAGGAGGCGTTAGCAATAATCTTCGGAGTTAAGAAGTTCCATCAGTTTCTCTATGGACACTCATTCACTATCAAGACGGATCATAAACCTTTGGAGGGTTTGTTGAATGAGAAGAAAGGGATTCCAGCGCTTGCTGCACCACGAATCCAACGATGGGCACTGACCTTGTCTGCTTACGAGTACACGATATCGTACAAGGCTGGTCAGACCAACGGTAATGCAGATGGTTTAAGTAGGCTACCCTTGCCTGAGATGCCTGAGTCAGTCCCAGTTCCAGGTGAAACAATCTTGTTAATGGAACATTTGGAAGGCACACCTGTTCATAGTGGTCACATCAAAGAGTGGACCAAGAGGGATCCAGCCCTCTCACAGGTGCTACGCTTCATCTTGGAAGGATGGCCAACCAAAAACAACTCTGAAGAGCTAAACCCTTACTTCACCAAGCGAAGTGAATTGAGCGTAGAAGATGGTTGTGTACTGTGGGGTGCCAGAGTGGTTGTACCCCCACAAGGAAGATCGAAAATACTTACCGAGCTGCATGAGGCCCACCCAGGCGAATCACGCATGAAAGCATTGGCACGAAGCTATGTATGGTGGCCGGGCATGGATCAGGAGATTGTGAAGAAGGTGAAGGGCTGCAACAAATGTCAGGCAAATCAGAGTGCACCTGCAGAAGCACCATTACACCCCTGGGAGTGGCCGGGACTCCCTTGGTCAAGAATCCACATTGACTATGCAGGGCCTTACAAAGGAGAAATGTTCCTTGTAGTCGTGGATGCATACTCGAAGTGGTTGGAAGTGCATCGCATGAAGTCTATCACGTCGACAGCCACAATTGAGAAGCTCAGAGAGATGTTTTCTACCCATGGCCTACCAGCAACACTCGTTAGCGACAATGGTAGCAATTTTACCAGTTCAGAATTCCAGGAGTTCATGAAAAGGAATGGAATCAAGCACATCAAGGTGGCACCTTATCATCCTGCCTCAAATGGCTTGGCAGAGAGGGCTGTGCGAATCTTTAAAGAAGGCTATGAGAAAATGGAGGATGGAAGTGTCCAAACAAAGTTATCACGGTTTCTCCTTAGTTACCGTACCACCCCTCATAGTACGACTGGAGTTCCCCCAGCAGAATTACTCATGAAACGGAGATTGCACACACATCTGAATCAGCTTGTGCCAAGCATAGCAGATCGTGTTAGGAATAAGCAGTCCCAGCAGAAGGCAGCACATGATTACCATGCTAAGGAGAGGGAGATTCTAGAGGGCCAGGCTGTTTATGATAAGGATTTCCGGTGCAAGAAGACCTGGTTGCCAGGAACTGTCTTGCAGAAAACTGGTCGAGTGTCAGCTCGAGTTCAGCTGGACAATGGGACAGTCATCCGGCGGCACCAAGACCATGTTCGACACCGTGAGAATGATGTGGCAGAGGAGCCAGTTGTAAGCGTGACACCAAGCGTGACACCAGTTGTTTTGCCTGAACCCGATGCAACATTACCCACCCGTGGTGTTAGCGACCAACTCGAGGTTCCTAAGTCTCCATTAGCAGCACCTACTCAGACACCCTTTGAAACAAGTTCTCTGGTTGCACGCCCTCTGCGGAAAAAGGTCAGACCTGGATACCTGAAAGACTACCTGTGTGAATAG

Transcript

BRAKERNUST00000023232

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
Q99315	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3
Q7LHG5	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000022 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00077 all species →	RVP	Retroviral aspartyl protease	Domain	Interproscan
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00665 all species →	rve	Integrase core domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR018061 all species →	Domain	Retropepsins	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000023232.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.