Gene detail

Detailed information of BRAKERNUSP00000023673.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029191693.2, pentatricopeptide repeat-containing protein 1, mitochondrial-like [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000023673

ATGGCGGTCGCGATGCGAATACCATACTTACGAATAGAACGTCTGTACCAATTTCTTTCGCATTGTAACAAATCAAGCACTTATCTGTCGCAGGGGTCTTCAATAAGACGCTCAATCTATACCAGGAAACGTAATTTTCATTTGAAAGCGTCTCCTGTGTTGAATAGAAAGTGGGATACCATGCGCACGATCGATCATGACTTTCCGAGATCTCGCGAGTTGAGTCgtcaagaaattgaaaaaacgaCACGATCCACGAACACTATAATCAATCATCACGAAGATGAATCCGAATCTGATTCAGATAGTGATGACCAAGAAAGCAGGGATCATAAATTTGACAAATTGAAACAGCGAACTGCAAGAAGAACATCAGTTGCTAAGTCAACGCTAAGTCAAAAATCTGGACTGAAAAAAGCTTTACGGCCTTCCAAGTATCTTTTTAGAGACCGTGGAGGATGGAATGAAGAAAACCAGTTTGAGGGAAGGGATATtccagaagacgtcaaaagcaAAACCAGTTGGTATGCAAGGCAACTGATACGACTCACGAATGAGGGCAAGATTGATGAATCCTTGGAGCTCTTTTCTCgcatgaaagaagaaaaagttcCTCTTACTGTTGAGATTTTCAACATCATCATCTCTGCATATGCTAAGAATGGAAAGATGAGGAAAGCTTTTAAATTATACAATGATCTGAAAAAGAGAGCAATGCAAGCTACACCACACACTTACACCAGTCTGTTCAATGTTTGCACCAAATCTTCATCTTCTCAACATGCATTGCAGAATGTTGAAAAGCTTCTCGCAGAAATCAACACAAGGATTACTAGAGATGATCTAGAAATGAATGTAATCACTTACAATGCTGCCATCCAGGCTGTTACTGTTTGTGGGGATCCAATCAGAGCATTTGAGATCTACAAAGAAATGAAACACAACAATGTCAAGCCAGACGGCCATACTTTTTCATCACTTCTGACTGCCTGCTCTTTTGACAAAGTTGAGGGGCCAAGCATAGCAATCAAACTGTTAGATGAAATGAGGAGCATGAAGATAAAGCCAGATCTTTACATTTATAACTCTGTTTTGAAGGTCATTAGAGATTTTAAGGTTTTCAACACGGCAAAAAATCTGCAATTCTACTCTAATCCCATGACAAATTTTACAAACTCATTGGCTGAGGAAGTAAGTGAAAAAGCCAATAAAGGTGATACAATAGATATCAACCATGACAAATTATCCCAAGATACTGACAGTTCATTAGGTGATGTAAATAATGCcaggatggaaagaagtgaagatcttaaattacaaaattattttcctGGAGTAGAAAAGTTTCTGCAAATGATGGCAGTGGAGGAAGTTTATCCTGATGTGCGTACTTTTCAGCTGCTACTTTATCTGACTTCGTCAAACGCAGAGGAGGAATACTTGATGGAACTTATGAAAGGTTGTAATATTTCTCCTGATGTTACATTTTATAACACTCTGGTGAGGAAGAGTGCACTCAAAGGAAATTTACAAACAGCCAAGGAACACATTAAGAATCTGGAGGAGACACTGAATGTTGCTCCATCAGAAAAATCTTACCAAGTACTTGCACGTGGTTGCAAAGGCCCAGAGGATGGACTGGCCCTGTTGAATGAGATCAAATCTGTAGGTGTTACTCCAGCTCAATCAGTTTATGGAACATTAATTGCAGGAGCAGCCAAACAGAGACAGTTTACTTACCTCATCCAGCTTGTCAAAGGGATGACAAGAGATGGCATAAGGCCTAATGACCGAATCATGACAGTTCTTGAACGTGTCTACAACCTGCCCTGCAAGAAACCTTTTATCAAAGAAAACTCGCATCACCGTTCCGCAAAGGAGCAAAGGTTTCGACATGTAGAGCAGAAAGGTTTCCGGTCCTTTTTTGAAAACTGGAGAGAGAAAACTGTCAACAGGGTAGCGTCATCGGAAGACTATGATAACGACAACGACCTCACGGATGATAAAGATTTCAGCCATCTctaa

Transcript

BRAKERNUST00000023673

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VD13	Pentatricopeptide repeat-containing protein 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Ptcd1 PE=2 SV=1
O75127	Pentatricopeptide repeat-containing protein 1, mitochondrial OS=Homo sapiens OX=9606 GN=PTCD1 PE=1 SV=2
Q8C2E4	Pentatricopeptide repeat-containing protein 1, mitochondrial OS=Mus musculus OX=10090 GN=Ptcd1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009404 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan
PF13041 all species →	PPR_2	PPR repeat family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47936 all species →	PPR_LONG DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000023673.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.