Gene detail

Detailed information of BRAKERNUSP00000024025.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_015766570.1, PREDICTED: chondroitin sulfate ABC exolyase-like [Acropora digitifera]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000024025

ATGTTCCTGTGGTATTCATTTCAGCTTTTGGCCTTTCTGGTGGTTATTGTTCCTTATTCGGACTCCTCTTCGTCCACCGTTTGTAAGAAAGACCACGTTTTTGATTTCGAAGATTCAAGAGATACAGACTGCTTTCAGGTTGTAACATCAAGTGCTGGTTCGAAAACATTGTCCACAAACAAGAAGACCGTAAAGCTCGGACAAAAATCCTTGAAATGGAAAGCAACCTCGAACTCTCCCTCGAGTCTGCGCCTAGATCTGTCAAATGCCCATAAAATTACTACTCAGTGGTTTCAAAGGGGTGGTGTCAAAGTTTGGTTCTACAAAGATAGTGCTTCACCAGGAAAATCCCTGTCAATCaagttcaaagaaaatgcagGAAGCTCACAAAGTATCTGCACTTTTGATGCGAGTCTGAATTTTCAAGGATGGAGGGGAATCTGGGTAAAATTTACAGAGTGCATACCTCCAGGCACCAGCATTGTTCCAACCAAAGTTATCCTCTTCACCTTAAGTGGCGCAGATACTATCTACATCGACTTACTGGAGTTTAAATCCGAGCTTGGTAAACAGTCACGTGACAAGATAGTTCCACCAATCAGAGGAGTGGATCAGTATGACGCAAGTAACACTTGGCAACGAACTTATCACTGGAGTCAACAACCCGTACCTCCGTTACCCTCGAGAATTGATCAAGAGAAGAAAGCTAGTTTTGATGTGATTAAGAGCCGGCTTAAGAACTGGTACCTCGACGAAACCAAAACAACCCCTAACTTCCCAAGCGAAAGTTTTCTCAAACACAGATGGGATTCTCTGCAGGGAAGTATTCAACAAGCACACCAGTCTTATGATGCTTTGACTTTCGAAAGTCAGAAACTCGTGGGACCTCCTTTGTTCTGCAGAAActgcagaaataaaaaaaagtttggGGAGGTCattacaaaaattcttttgccaTTGGCAGTGGAATATTATCTTAGATCTCGTACTGCCGAAATAGACAGCACTGTTTTAGCCGAACTTAATAACCTCAATTCTGCTAACACATCTGTTAAGAACACTGCATACGAAGCCATCGCGGGTTGCCACCAGGCCATGCAAAAAGTATTCAAAGACTTCCTTCCCACTTCATCTAGCCTTCAAGCTGATCAAGTAAAAGCTACCATCAAAGCTCTTAATCTTCACCGATTAAGCAAAATCAACAGCCTTCTCGATTTTGTGAAAGATCAAGGATTCGCCGACGGAAGTGGCCTTGGCTCATTGGACCACGAAATGAACAGAGACGGTTCCGGCTTCTCGCACACTCTCTTTCTCATCAGTGACTCACTGAGTATGGCCACAAACAAAAGCAGATTGGAGGACCTTATCAACACAGCCAAATGGTACAACGAGTTTGGAGAGGTTTATCAATCACCCGCATTCGAATATAGAGGCACAACTGCAGATCGTATGATAACATTATGTTTGTTTAGAATTCTTATCGTGCTAACGATGCCAAAGGACACGGATGTAGAAATTAAAGCAAGAATAAGAGACATGGAAGCCCTAGTTAAATGGTTGGATAACTCAATAGCTGTAAACGAGGGTCTTGGAGGAGTTATGAAACCCGATTACACCGGACATCACCACAAAGCGTTTTATGGATCCGCCTATGTTCCACAAGCCTTACACAATGCAGCATTGGTCCAATACCTTCTTCATGGAACTGAATTTTCCCTGTCGACAACATCGGTCAACAACATCAGGCGAGGACTTGAAACAATGCGTCTTATGTCGGCCAAATATTCCACACCAAACAGTGTGAATGGGCGCTTTCCAAATTACTTCAATAAAGTGCTCTTCAAGGCCTTGCCAGGATATGCCTACATCAGTGTTTCTAATCCTCCAACCTCAACGGTGCAATCAGGAATAACAGTAACTGGTGTAAAGGGACCAGAGATGTTTTTGCGCTTATATGACGAGAGTGACCCAGACATGATAGAATATTTGAAAGGAGGGAGAATTAAAAAAAGCAAGTACTATTTTAACACTCTGGGAGCTTTAGACATAATGAAGAAAGTGCAAACCACCTCTGCGTCAAAAACCATTTCTGCGGAGCCCTCTCCCGAAGGTCACTGGTCGAAGAACTACGCGGTTTTATCGATACATCGTCGAAAAGATTGGGTGGCAACAGCTAAAGGGTTTACCAAATTTCTCTGGGACTTCGAAAATAAACCAAACAAGGAAAATATATACGGAATGTTCGCTAGTCATGGAGCACTCCTGATTGCAAACAGCGAAGCGATTCTAAAAGTTCACGACGTTGAAAACGGATGGGACTGGGCTAAAGTTCCTGGAACCACAACTATAGCCCTTGGAGACTCAAATATTGATGACTTAAACATAAGGGAAGCCAGGTTTTACAACAAACGGGAGCTAGCTGGGGGTCTGACGTTTAAAGGAACATATCCTTTAGAAAACGGAATTTTCGGCATGGATTTCGATCAGCCTAATTATGAGTTTGATTCAACAGATTGGCGTGGTAAGATCACGTTTAAgttcaaaaaatcatttttcttttttgaaaacttgatCGTGAGCCTAGGAACTCACATTACGGcaacaaacacaaaaaacaaaatagtcCAAACCACTCTTTTCCAAGACAAACTGTTCAGCGCAGACAGCTCATCGAAAATCAAGGTGAACGGAGTCGATAAAACCTACTCGGACACCCTCAGCGGTAACTCTGCACCGTCATCTAGTAATAGTTACATAACGCTCACAGACACAAAAGGGAATTTTTACTACATTCCGAGTTCCAGCCAGTCCATGTTAAGAGTTCACGTTAAAGATCAGAACTCCAAGACCGACGATGGCAAAAGCAATACCTCGGGCCGGTATGGCACGGCTTGGTTCGATCACACCAGTTCTCCAAACAACGGCAAGTACGAATTTGCTGTTTTGATACCAACATCAACATACCATGCGACATTAACAGACCTAGCAACTGCTCAAAATGCCGCTGGAGACGAAGTCTACGAAGTTTTGCTAAACAACCGCCAAGGCCATGTCGTCAAGTTTCTCAAGTCGCCAAGATCAGGGACGAGCCTCACCCACAGTGTGACTGGCTACGTTCTTTTCAGGGAAAAGTTTACCCTTCCAGCCGGTGGTCCAATCGAGGAAGTTAACAGTAACAATCTTCTCATTATGGTTGAAAGCACGACTGACTACATTTATCTCAGCATAAGTATTCCGGGCTTGAATCTCCAAACAACGAAGACAATGAGAAGTTCCAATGATGCGCAGCAAGAAGAAAGATATCATTCAGCTAGTGAGGAGAGAAAAGTAGAAGTCAAATTGCGAGAAGAGGTGGAAAAGAGTGTCGTCTATGCCCAAACCCATGGAGATCCGGATTGCTACAAACCCAATGTGTGGGTTCGAGATTATACTGAATCCGGTGAAAGCAAAAGCAAATTGGTTCAATTTTTAAATCTTAAGAATGGTTTCAGTGTTGAGGTTAAATTGAAGAAGAAGATACAGTGA

Transcript

BRAKERNUST00000024025

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5G6D7	Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron OX=818 GN=chonabc PE=1 SV=2
Q8A2I1	Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=chonabc PE=1 SV=1
P59807	Chondroitin sulfate ABC endolyase OS=Proteus vulgaris OX=585 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000631 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02278 all species →	Lyase_8	Polysaccharide lyase family 8, super-sandwich domain	Family	Interproscan
PF09092 all species →	Lyase_N	Lyase, N terminal	Domain	Interproscan
PF09093 all species →	Lyase_catalyt	Lyase, catalytic	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003159 all species →	Domain	Polysaccharide lyase family 8, central domain	Interproscan
IPR015176 all species →	Domain	Lyase, N-terminal	Interproscan
IPR039174 all species →	Family	Chondroitin sulfate ABC lyase	Interproscan
IPR014718 all species →	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR015177 all species →	Domain	Lyase, catalytic	Interproscan
IPR011071 all species →	Homologous_superfamily	Polysaccharide lyase family 8-like, C-terminal	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37322 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan
GO:0006027 all species →	Biological Process	glycosaminoglycan catabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08961	K08961; chondroitin-sulfate-ABC endolyase/exolyase	EC:4.2.2.20 EC:4.2.2.21	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.