Gene detail

Detailed information of BRAKERNUSP00000025033.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029180588.2, WD repeat-containing protein 19-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000025033

ATGAAGCGTGTATTTAGTGTTCCTGAAAAGGTGACTGGTGGAGGTGCTGTGACCTATAGCTGGCAACAAAAACTAGGAAACTACTTAGCTGTAACTGGAACAAATAGAGTTGTTGCAATTTATGATCGTCATGGAGAACAAAAAGATGAAGTCAACCTACCAGGGGTATGCACAGGAATGGCTTGGGATAAAGATGGAGATACCTTGGCCATTATACAGGAAAAAAATGGTATTGTTTATTTATGGGATGCAAATTCGCACAAGACCATACAGCTAGAAAGTGGGCTTAGGGAAGGATTAACTTTTTTACTCTGGTCAAGAGTTGGGCCACAGCTGGCAATAGGAACCTCCAAGGGAAACTTGCTGATGTACAACCATCAAACGTCAAGGAAAGTACCCATACTTGGTAAACACACGAAAAAGATTATTTGTGGGGCCTGGAACTCAGAGAATTTACTAGCGCTTGGTGGTGAGGACAAGTGCATCACAGTCAGTAATGTTGATGGGGATACAATTAGACAGGCGACTGTTCGTGCTGATCCAAGTGACATACAGTTCAGTGAGATGAAGACCGACGAGAGGAGCTCCATAGGAGAGAACACAGTCAGCATGATAGTTGGCAGGAAAACCTTATATTTATACAACTTGAATGACCCTGACAACCCTGTTGAACTGGCTTTTCAGCAACGATATGGGAATATAGTAGCCTACAAATGGTTTGGTGATGGCTACATTATGATAGGTTTTTCAAATGGCTTCTTTGTAGTTATATCTACACATATCAAGGAAATTGGACAGGAGTTGTACCAAACTAGCGATCACAAGGATGAGCTGACTGGCATTGCCATATCATTGGAGCTTAATAAGGCTGCATCTTGTGGCGACAACTGTGTGAAGATTCATGACTTGACAGAACTGAAGGAGATTTATGCCATCATCACCATAGAAGATGCAGGAGGGCGCCTGGACAGGATCTCTTGGACAGATGATGGACAACTGCTTGCTGTTGGCACCCAGttagGTGCCATTCACGTGTATCTTACAAAGCTGCCAGTTCTTGGAAGTGCAAATGGTACAAGGTTATCCTATCTCACTTCTCTGAGAGAGGTGACCGTGGTTGATAATGTTATACAGgaACGCCCCCTTAGTGTGGACATTATTGTCGAACCTAGCTTTGTTGCACTTGGGCCGTATCATCTTGCTGTTGGAATGAATAACCGTGCTTGGTTCTACTCGTTGGCTGAGAAAGGTTCCGAACAGTTGAAAGACAGGGAATACCTGGGAACTGTTAACACCATTCACCTGAATGCTGACTATGCCGCTGTCTTGTTTGAGGGCAAAGTTCAGCTTCATTTGATCGAGGGTGAATCACTGGATACATCGGATGAAAGAGAGAGCAGACTCTTTCCTGACAAAGTCAATCAAGGACGAATCACCTGCTGTGCTTTGACCTCTGAATTCTTAATCTATGGCATGGATAGTGGAAGCCTGTACTATTTCTTTATTGAGGACTGGCAGTTTGTGAATGAATTCAGACACGTAGTTGGTATCAAGAAGATTTTTCCGGATTTTAGTGGGACTCACGTTGTGTTTATCGATGACAAGTCAGATGGATTTGTGTACAATCCTGTTAATGATGCTACTTTTGAGATTCCGAACTTTTCTCCTAACATTCGTGGAATTGTCTGGGAGAACTGGCCGTTGGATAAGGACCTGTTTTGTGGCTATGATGAAGACAAAATTTACACTTACATATTTTATAGAGACACTGTCATTGGGCCCCAATGCATAATGGCGGGCTCTACCAAGTTGCCGTACGCTCAAAAACCTCTGATGTTATACGGAGGCGAAGTTACGTGTCAAACACAAAGCGGAAAGACATCCAAGCTTAACCTCACCACGCATTTCTTCCACGAAAAACCTCAAGATCTTCCAAAAGCTGATTTGGAAACGTCCTTTAATCACTGCTTGGCACTTAAACGGTTTAAAGAGGCCTGGGCTTTAGCCCGTATTATAGACTCCAACGAAGCGTGGAGTGAATTCggaaaaaaggcaatttaccatTTGGATATTGAACTGGCAATACGAGTGTATCGCAAAATGGGCGATGTAGCTATGGTGCAGTCTCTGGAGAGCATCCAGGACACTGAGGACAAAAATCTGCTGGCAGGATATGTTGCCATGTTTTTGGATGAATACAATACTGCACAGGACTTGTTTCTCGGCTCAGCGTATCCACTTGCAGCCCTTGAGGTACGTCTTATTTGTATTTATGTTGTCAGTCTTCTGCTAACGCTGTTGCGGATTTCAAAAGGACAGCTGCACATAAcgttaagaaatagaaaatag

Transcript

BRAKERNUST00000025033

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UGF1	WD repeat-containing protein 19 OS=Mus musculus OX=10090 GN=Wdr19 PE=1 SV=1
Q8NEZ3	WD repeat-containing protein 19 OS=Homo sapiens OX=9606 GN=WDR19 PE=1 SV=2
G5ECZ4	WD repeat-containing protein dyf-2 OS=Caenorhabditis elegans OX=6239 GN=dyf-2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003256 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15911 all species →	WD40_3	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039468 all species →	Repeat	WDR19, WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR040379 all species →	Family	WD repeat-containing protein 19/dyf-2	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14920 all species →	OSMOTIC AVOIDANCE ABNORMAL PROTEIN 1/WD REPEAT MEMBRANE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0030991 all species →	Cellular Component	intraciliary transport particle A	Interproscan
GO:0035721 all species →	Biological Process	intraciliary retrograde transport	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000025033.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.