Gene detail

Detailed information of BRAKERNUSP00000025586.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: CAH3160400.1, unnamed protein product [Porites evermanni]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000025586

ATGGGTTCCTCCTCAGGTTGGTGTTCTTCTAGGGTGTCAGAAGTTGCTGCATGGTCTGGTGCATCTGTGATACACAGATGCTTGTGGAAGATATTAAAAGTTATACACGACGATTACCCTGCTATGAAGGATGCAGCCAGTGTATCCTTAGACATGTCTTCAGTAGCCGATATTATGGATGGACGCCTTGTCCACGCTCTCTTTTCACTGGCCGGAGATCAAAGTTCAATGGATATAGAAGCCTTTAGTTTGCCAGAGGATGTGATCAAAGAAGCAAAGAGTGCTTGGATTGAGATCGTCGCTGCAGTGAACACCACCCGACACCCGGATCTGTTACAATCTTATTTCCCCCATATCTTTGCTGGGTGTGTTGCAGGCTTCCCCAGGAAAGAAGACGAAGACGGCGTTGAATGGGAGTCTTGTGTGAAACTCAAAAAGCTGCTTGGTGTAGATAATGTTCTTGTCAATGAGTACGCTGGGGACATTCGGTCAAATATTAACGCCATGGCTGTAGAGGAGAGTGTAGAAGAGGAATTGTTTAACATTGGTCGGGAATTTGATGAACTCTACCACTGGCATTCGCTCAAGCCACTTTCTGATGATTATGATAGGACAGAGAAAACGATTACAGAAAAGCTTCCAGACGATCCACGACTAAGAAAAAAACGTTTAATTGGAAAGCAGATATTCGCGCGCTACCACAGACTTTATGGCGATTCACTTTCTGGTGATATTGGCCTTGCAAAAACGATCATCGTTACAAATACGAACGCCGAGAAAAAGAAGGGCaagaaaaaggaaggaaaagtgAGCCAGAAAGCGAAACAAATCATTGAAGCGAATGAACAGAAACGCAGAGAggaagagcaaggaaaagaCCAAGAGAAGTGGAAACATATCGAGAAAAGCCTGAGGAGTGAAAATTACAGTAATGCCTTGCAGTTGGTAGATGAATTTCTGACCAAATGCAAATCTCCAGATTTCTCTTTCCAGGCGCTCATGAAAAAGGCACAAACTTGCTTGGATGCCTGGCAAGACACCCGTTCTCGTAACCCCAAATCAAACGAAATGAAATATCCTGTTCTTCTTATGGAATgtgcaaaaaaaatgtattgtGAATTCAACAGTCATCTTACCcgcaaaggaaaaaaggaactaGCAGGATACATGCAAAAGCTGGGCTTTAATGACATCTCAGTCATTTTCTATGATCTGAAGCCAGAAGCTGAAAATAAGGCTCGAAAGCTCTCTGTTCACATGACCAGCGTGAGATTTCAACTTGAGTTCATGGGACATTTGTTGAAACGAGAGGAACGAACCGATCGCGATCCTCGGGTCGACCACTTTATCCCTGATACTTGGCAGCGTGAGCTTCTTGATGCTGTTGATAATAACGAATCAGCTGTAATAGTGGCTCCCACCTCATCAGGGAAAACATATGCTTCTTATTACTGCATGGAGAAAGTCTTGAGAGACAGCAACGAAGGAGTAGTGGTTTATGTCTCACCCACCAAGGCTCTGGTAAATCAAGTTGCCGCGACGATTTATGCCCAATTTCGTAACAAGCAGCTTCCAGAAGGAAGATCAGTTTATGGTGTTTTTACCAGAGATTATCACTACAACACTTTGAACTCTCAGATTCTTATTACAGTCCCTCAGTGTTTGGAGATATTTTTTCTCTCGCCTCATAGGCAGGAGTGGACTGAAAACGTCAAATATGTAATTTTTGACGAGGTTCATTGTCTCGGTGAGGAGATCGGGGCTGAAGTGTGGGAGCatcttcttcttttgtttcgttgCCCCTTTCTGGCGCTTTCAGCTACCATTGGAAACCCAAGTGATCTACTAGAATGGCTGCAAGCTGCCCAAGACTTTCGTCAAGAGCAAGACGGGCAAGACAAGGGAAACCTGAGGAAATCATACAGAATCAGACTAGTTACCTGCGAGGAACGGTACTCGGATTTGGAAAAAAGCATTTACCTTCCCAAGCGAGTTGCTCCAAGTGATGAGGAAATTTCTAAAGAGACAAGGAAGTGCGAGGGTAACGATGTCTCTAGCACGGAAAACTTTGTCAGCCTGCATCCATGCGCTCAACTAGCAACCAAACAGCTACGTGAAAATGGTTTTCCTGGCGACATGGCCCTCACTCCTAGAGAAACTTTGCAACTGTATGACGCTATTGCTCAGCACTGGCCTGACAAAGAATCACTGCAGcGAATTTTTCCAGAGAAATATTTTcaggaaaataaatttattgGCAAGAGGCATGCCAGGCAGTACGAGGAGGAGCTGAAGAAGGAGTTAAAGTCATGGGCAGATGATGAAAACAAGTTGCAGAAGGTCAACCAGctttattag

Transcript

BRAKERNUST00000025586

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IY21	Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens OX=9606 GN=DDX60 PE=1 SV=3
Q5H9U9	Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens OX=9606 GN=DDX60L PE=1 SV=3
Q09475	Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans OX=6239 GN=C28H8.3 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001372 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR052431 all species →	Family	SKI2 subfamily ATP-dependent RNA helicases	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44533 all species →	DEAD/H RNA HELICASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000025586.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.