Gene detail

Detailed information of BRAKERNUSP00000026049.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029193551.2, recQ-mediated genome instability protein 1-like isoform X1 [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000026049

atggcggctgttaGTTGTTGGTTGGAATCTCGCTATGTTTATACGCAAAATGAATGGTTAGAAGCGTGCATAAATTTTGTAAAGGAAGACAACGAGGATAGGCAGTTGACGCCTCTCGAACTGAATGATCTTATCTATGAGCAATGGCTTATGGCTGATATTCAAGAATCCAGTGTTCCTCGCCTTCCAAGGGAACTTGGTAACACTGAAAACTGCAAACTAGAGGGATATTTTAACCTTCAGATAAACTCAGTCCTGAATGTTGGAGAGGCAGCGTATTCTCAGATCCAAAAAATGAAAGGACAGGACGATCCAGAAGAACTTAACTGGAAAACCAATCCTTCAGAACCAAAAATCAAAGCCAGTAGAATGTTGCTACTAGAACTAACTGATGGAACACAGACTGTTTTTGGAATGGAATATCAACTGATTTCATCCCTTAAAGTAACAACTCCTCCTGGAACTAAGATACAAGTGGGTTGCCCTGTATCCTGTCGTTTGGGCGCATTGCTTCTGACTTGCAATAACGTGAAAGTTTTGGGTGGAAGTGTTCAGCTGTTGGAGGAAAACTCCTTCTGGAATGTCCTACACCAAGTCATAGGGCAAGAACCCCCTGAGCAACCTGGTGTTTCCAGAACGGCTGAAAGCATTCAGCGTGAAGAGCCAAATGTCAGTAATGCAACTGATTATAATGTCAGCAGCAGTATCCAAAGATCTGAAGTGAAAAATGAAGCAACCCAACTGAGACCATTCATTACGGCACATAGCAACAAGACATCTTTTGCAAAAAATGGTGGAGCATTTGAAAGACAGGGTTCACATGGTAATAGAGCAACTCAAAGCAGACAGTTTCAGTCAGGAACAGTGCATAATGACTtttttgacaatgatgacataaTAGCAGGGTTTGACAATGAGGATTATTTTGGAAATGATGAAGAAATTGACATGGATCAGATAGATAGGCTAGAGAAGGGGATGCAAAATAGAGAAGGAACCGTAGAAGTGAAGAGAAAAACAACTTATGAAATGGAGCAATTTGAAAGagatgatttgaaaatgttttgtgAAGGTGATGATGGTGGCATTTTTGAGGATGATTTCATTGGAGAGGATCCAGTGCCAGATGATGAAGAATGTGTGGAAATGAAATTTCCTGAGCAGaaaaactatttcaaacaaAGATTTGGGGTAATGGAGCAACCAAAGAAAGCACAAACTTCGAACACCAAGTTTGTGGAATTTAATACTCATTCCCGGAAAAGTAGTTCTGCTTCTGATAATCATGACCCTTTTGTTCAAACTGAGCCACACTTCATTTCTGGAAAACCAAATCTTATGAATGATGTGGAGATGCTATGTGAAGATAACGACGATGACATTTTTAAGGATGATTTCATTACAGATAATCCTGAAGCAGAGGACTTGGAATGTGTTGAAATCAAACCACCAAATGCACAAGATTTGGCATTTAACAATACCACCTGGAACCCAAACTTGTCATCTTCTTCAAACAATAACAACATTATTTCTGCAAGGACACTCATGGTTAAGAAGGATTCTACATTGCCAATGAGTAACCCAAGAAGGGATATGTTTAAGATGGAACACCATGCCAAACTGAACAATTCTGCCACTTCGAAAGATTCTGCTATCAACAGGAAAAGCCTTCAGTACTACTCAGCTCCATTTGAGTACCTATCACAGATTCTAACAAAGTACCCATTTGGGCAAGACCGCATCATCAGAGTCAAgGCATACATAGCTACCATTGTGTCTCGCTCAAAGCCGTTGTCACCAAACTGGAATGTAGTTGTCAAACTGAATGATGGAACAGATACAGTGGATGCTGATCTCAGTGAAAAGGTTCTCACAGAGCTGTTGGAATTTCCAGTAGACGAATATCGGcgTGAAATGCAAGAAGCTGTCAGTACTCGTAATACGGCTCTTTGTCAAAGATTACAGAAGAGAACCGAGATATTTCAGAGAAATCTTGCTTCCACATCCTGTTTGATGGATTTACAGTTCTCCCCAGGTATACCTCGACCTCGTGTTCTTCAACTGATCCAGCCAACATCAGAGGACGTTTCAGCAGTTCTTCGTCATGTCAGAGTACGATTCTAG

Transcript

BRAKERNUST00000026049

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D4G9	RecQ-mediated genome instability protein 1 OS=Mus musculus OX=10090 GN=Rmi1 PE=2 SV=1
A4IF98	RecQ-mediated genome instability protein 1 OS=Bos taurus OX=9913 GN=RMI1 PE=2 SV=1
Q9H9A7	RecQ-mediated genome instability protein 1 OS=Homo sapiens OX=9606 GN=RMI1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004252 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21000 all species →	RMI1_N_N	RMI1, N-terminal helical domain	Domain	Interproscan
PF16099 all species →	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan
PF08585 all species →	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044881 all species →	Homologous_superfamily	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Interproscan
IPR049363 all species →	Domain	RMI1, N-terminal domain	Interproscan
IPR032199 all species →	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR042470 all species →	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR013894 all species →	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790 all species →	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604 all species →	Cellular Component	nuclear body	Interproscan
GO:0031422 all species →	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000026049.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.