Detailed information of BRAKERNUSP00000026196.1 in Montipora cactus

Genomic Location: BLFO01002294.1:57122...75650
NR annotation: XP_044172182.1, regulator of nonsense transcripts 2-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A2AT37Regulator of nonsense transcripts 2 OS=Mus musculus OX=10090 GN=Upf2 PE=1 SV=1
Q9HAU5Regulator of nonsense transcripts 2 OS=Homo sapiens OX=9606 GN=UPF2 PE=1 SV=1
F4IUX6Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana OX=3702 GN=UPF2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003459 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02854
all species →		MIF4GMIF4G domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003890
all species →		DomainMIF4G-like, type 3Interproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR039762
all species →		FamilyNonsense-mediated mRNA decay protein Nmd2/UPF2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12839
all species →		NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000184
all species →		Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005844
all species →		Cellular Componentobsolete polysomeInterproscan
GO:0035145
all species →		Cellular Componentexon-exon junction complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for BRAKERNUSP00000026196.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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