Gene detail

Detailed information of BRAKERNUSP00000026695.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029189362.2, fibropellin-1-like isoform X1 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000026695

ATGATCTGGGATCTGGGAAACAAGGGTCGTGTTGTACTTGTCTTTGTCTTGGATAGAACATTTGGATGGcCTGCCAATGCAAAGGGAACATTGTCCATTCAATTTGTGGATTATAATAATCCAAGTTCACGGGATAGATTAGGTTTTTGCTGTGATTGCTGTAGTTTCTTTGGTTCCTGTCTGAATGATTGTGATAACTTCTTCTGGCTCTATGCTGTGCCGTACCCTGTGAGTTCTTCCAGTGTTTCCAGTGCTTGGAAGCTATGGCAGACACATGTCATGAGTGGAGGTGATAGCTTCACCTTTCCTGGCTATGGGCAATCTCTTGGTGATCATAATAACCCTGTGACATATCACTTTGATGGAAGGTGGCCGGAAGCTTTTGGTATTGTCTTAAAAGTTTGGGATGACGATAGTGGCAATATTTTAGGAATTGGACGTGCTGATGATCTGGTTGACCACATTTCAGTCAATGTTCCTAATGTTCCTGCACAAAAAGATTTGCAGAGTGCTGTAGCAAAGAGTGTTACGGTGACAGGCCTCAGATCTACCACTAGATTTCTAGTTCGTGTTTATTGTGATGCTAATTACTATGGTACAGATTGTAATACATACTGTGTTGCAAGGGATGATGCTGGTGGTCACTACAGGTGTGATAAGGACACTGGAAATAAAATCTGTTTGGATGGCTGGATAGGACCCAACTGTCTTACTCCTATTTGCAGGACTAGTTGTGATTCAGACCATGGTTCTTGTACAGTACCTAACACTTGCATATGCGACAGTGGTTGGACTGGATCGCTTTGTAATCAATGTATAAAAAAACCTGATTGTTCAGTACATGGTGACTGTGTGGAGGGAAATGATTGTGTTTGTCATCCTGAATGGACAGGTCCAAATTGTGACCAAGACTTGAACATGTGTCGTGATCCACAGTTGTGCAAAAACGGTGGGACTTGCATTAACACAGGCCCTGATGAGCACAGATGTGATTGTTCACCTGGATACACTGGTGCTGATTGTGGAACAGAAATCAACCTTTGTGCAATCGACCCTTGTCAAAACAGCGGCAATTGTACAAACTTCAGAACCTACTATACTTGTGCATGCCCAGCTGGATTTGAAGGAGCTGACTGTCAGACAGACATTGATGATTGTAAGCAAGATAACTGTAGGAATGGAGCAACTTGCAGGGATGCAGTAAACGATTATCAATGTGTCTGTGTTGCCGGATTCACTGGACGTAACTGTGAAATCAACATTGATGAGTGTCAAACAGCCCCATGCAAGAATAATGGAACCTGTATTGATCAAGTCAATGGTTACAGATGCAGCTGTCTTCAAGGATTCAGTGATGTCAATTGTTTAACCAACATTGATGACTGCACTCCAGGATTATGCAGCAATGGAGGGACCTGTGTGGATGAAGTAAACAATTTTCATTGCGAATGTGCTCTGGGGTACCTTGGCAGGACTTGCAACAATGCAACAAATGAGTGCTCGACTCTTCCTTGTCAAAATGGCGGGACTTGTACCGATTTGCATCGCGACTATAATTGCTCATGCGTAACTGGTTTTACGGGAAAGGACTGTGAGACTAACATCAATGACTGTACGTCACTGTCACAGTGTAACCAAGGTGTCTGTCAGGACGGTGTGAACAACTTTACTTGTGTCTGTCACATGGGATTTGCAGGATTGCATTGTGAACAGAATATAGATGAGTGTCTTGGGCATCGGTGTCAAAACGGAGCCAGTTGTGTTGATGGCATTAATCAGTACACATGCGATTGTGCCAATGGATTTGATGGGCCGGTGTGTGGTAACAATATCGATGACTGTGCATCAGCCTTGTGTCTTAACAATGCTACGTGTGTGGATAAGATAGCTAATTACACCTGCAATTGCAGTCTTGGCTTCACAGGTCGACACTGCGAGATACCCATTGACTACTGCACTCAACAAGGATGTAACAATAGTGGGACATGTGTGAATGAACGTGGATACAGGCGGTGTCTTTGCCCACCTGGGTTTAATGGCTCCAGCTGTGAAATAACACCTTGCATGAGGAACCCTTGTAATAATGGCGTTTGTCATATGCTTCCTGATTTGAGATACAAGTGCTCCTGTTATCAAGGCTTCACAGGAATGCACTGTGATGTTGGGCATCAGTGTCAAAACGGAGCCAGTTGTGTTGATGGCATTAATCAGTACACATGCGATTGTGCCGATGGATTTGATGGGCCAGTGTGTGGTAACAATATCGATGACTGTGCATCAGCCTTGTGTCTTAACAATGCTACGTGTGTGGATAAGATAGCTAATTACACCTGCAATTGCAGTCTTGGCTTCACAGGTCGACATTGCGAGATAACCATTGACTACTGCGCTCAACAAGGATGTAACAATAGTGGGACATGTGTGAATGAACGTGGATACAGGCGGTGTCTTTGCCCACCTGGGTTTAATGGCTCCAGCTGTGAAATAACACCTTGCATGAGGAACCCTTGTAATAATGGCGTTTGTCATATGCTTCCTGATTTGAGATACAAGTGCTCCTGTTATCAAGGCTTCACAGGAATGCACTGTGATGTTGATATCGATGACTGCGATCCCAGGAATAACATATTTTCCCCCGAGGGTCTAGCTGAGTTTGGTTTTTGTGGGCAAAATGGCAGGTGTATTGATGGACTTAACGAATACACATGTCAGTGTGACAGGGGGTGGACTGGAAAGGAGTGCGAGATTGacaTTGACGAGTGCGCCCCCAATCCTTGTGAACATGATGGACAGTGCGTTCAGACGTTTAACGCCAGTTACCTTTGTGGCTGTGCTGCGGGATATACTGGTGTGAACTGTTCAGAAGATATTGATGACTGTCGTAATAATTCGTGTCAGTCGAACTCCACTTGTGTAGATAAACTCAATGGATATGATTGCATATGCTCTGCTGGTCTGAAGGGAATACACTGCCAGTCAAATTCCTCGTGGTGTGAAAATCCCAACCCGTGTTTCAACGGCAACTGCACAGACGTGGGTGAGAACTACACGTGCGCGTGTTTCCCAGGTTTTACCGGACAGCGGTGTGAAACAGATATTGATGAGTGTAAAAGCTCTCCTTGTGGATCCTCCGCGGTTTGCCTGAATCTGCCAGGAAGTTCTGTGTGTAAATGTGACATTGATTTCACTGGAGCACGATGCGATACAAGAATAAACGACTGTGAACCTCAACCTTGTCTAAATGGAGGAACTTGTGTTGATGGGTTAAGATCCTACACATGCAACTGCCACCCAGGATTTTTTGGTGACAGATGCGAGAAAGGCCAAGatGTTGATGAATGCCTCACCGGTCAGGCCGTTTGTGGAGCAGGAGAGGTGTGTGTTAACACTCTGGGTAGCTACACTTGCGTTTGTCCTCCAGGAACTAGAGGAGCTGAATGTACTATAAACATTGATGACTGCACACCTTCACCTTGCCAGCATGGTGGCATTTGCGTCGATCAACTTAACGATTATGCATGTGACTGCTGTCCTGGTTGGAATGGCAAGAACTGTGATCAATTTAACGAAATAGAGGATGTGTGTGGCTGTCAGCAGGGGACGTGCGAGTGTAACAAGCAAACTCAGGCCAGCTTTTGTGACTGTTTTCGTGGATTTGAAGGTGACAAATGCCAAACAAATTCTACGGCGGCAGAAATACAAAGACGTCAAGCTGCATCTCAACGACGagagaaagaggaaaaagaaaaacaggaagCCGTGAGGAGCAGAAATATTGGCATTGCGGTGGCGTTTTCTATGTTGGGAGTTCTAGCTGGAGCGGTAGCTATGTGGTTTTACATGAAGAGGAAATCAGCAGAACCGAAGCCTCAAAGATTTGGGTTTGATGGTGTTGAGCAAGTCAACTATGCTGGCGGTGAAATGATGTACACCAATCCCGCGTACAGTTCTGTTGGTGATGAGGGTATAATCACTTTCGAGACGAGACCAAAGCTTTGA

Transcript

BRAKERNUST00000026695

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P82279	Protein crumbs homolog 1 OS=Homo sapiens OX=9606 GN=CRB1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21700 all species →	DL-JAG_EGF-like	Delta-like/Jagged, EGF-like domain	Domain	Interproscan
PF01414 all species →	DSL	Delta serrate ligand	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF07645 all species →	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR049883 all species →	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916 all species →	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02599	NOTCH1; Notch 1	-	Endocrine resistance	ko01522	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.