Genomic Location: BLFO01002648.1:680920...687879
NR annotation: XP_029200247.2, probable transcriptional regulatory protein Kole_1935 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families
| CDS |
| BRAKERNUST00000030291 |
| Transcript |
| BRAKERNUST00000030291 |
| Protein |
| BRAKERNUSP00000030291.1 |
| UniProt accession | Description |
|---|---|
| B2RYT9 | Translational activator of cytochrome c oxidase 1 OS=Rattus norvegicus OX=10116 GN=Taco1 PE=2 SV=1 |
| C0QT62 | Probable transcriptional regulatory protein PERMA_0079 OS=Persephonella marina (strain DSM 14350 / EX-H1) OX=123214 GN=PERMA_0079 PE=3 SV=1 |
| Q8K0Z7 | Translational activator of cytochrome c oxidase 1 OS=Mus musculus OX=10090 GN=Taco1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004866 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20772 all species → | TACO1_YebC_N | TACO1/YebC protein N-terminal domain | Domain | Interproscan |
| PF01709 all species → | Transcrip_reg | TACO1/YebC second and third domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR017856 all species → | Homologous_superfamily | Integrase-like, N-terminal | Interproscan |
| IPR002876 all species → | Family | Transcriptional regulator TACO1-like | Interproscan |
| IPR049083 all species → | Domain | TACO1/YebC-like, N-terminal domain | Interproscan |
| IPR026564 all species → | Homologous_superfamily | Transcriptional regulator TACO1-like, domain 3 | Interproscan |
| IPR029072 all species → | Homologous_superfamily | YebC-like | Interproscan |
| IPR048300 all species → | Domain | TACO1/YebC-like, second and third domains | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12532 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K18189 | TACO1; translational activator of cytochrome c oxidase 1 | - | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora cactus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora cactus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
