Gene detail

Detailed information of BRAKERNUSP00000031646.1 in Montipora cactus

Genomic Location: BLFO01002784.1:845146...852789
NR annotation: XP_029193167.2, LOW QUALITY PROTEIN: homeobox protein orthopedia-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6SZ65	Homeobox protein orthopedia OS=Lytechinus variegatus OX=7654 GN=Otp PE=2 SV=1
Q6SR69	Homeobox protein orthopedia OS=Heliocidaris erythrogramma OX=7634 GN=Otp PE=2 SV=1
Q6SR68	Homeobox protein orthopedia OS=Heliocidaris tuberculata OX=7635 GN=Otp PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007423 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF03826 all species →	OAR	OAR motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR051895 all species →	Family	Orthopedia Homeobox	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003654 all species →	Domain	OAR domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46770 all species →	HOMEOBOX PROTEIN ORTHOPEDIA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24901	OTP; homeobox protein orthopedia	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.