Gene detail

Detailed information of BRAKERNUSP00000031883.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: CAH3028367.1, unnamed protein product [Porites evermanni]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000031883

atggcggaattAATGTCCCCGAAAGTTCTGATTTTCGTGGCGCCGATTCTTTGTCCTCAGTGTGTTGAGAAAGAACCAAATACTGTAGATGAAGGAGGCGAATCACATGGTCGTAGATGGAAGGAATCAGCCGTTTCTATGAGTAAAAACCTTCGTATGTCCGTGGACAAAAAAACCTCTTTTAATAACAATGAAGACGATTCGACTGACGATAGCAACATAATGCTGGAGTATGAACCTTTAGCAATTCAAGAGTCCGTGCACTTTTACTTGGAGAGTGAGTTTAATAGCACAGAGAGCTCCTCACTGCTTACAACCCAGTCTTCATTTGGATTTGTGACAGGGATGCATAATACAACTgatgaaattgaaaatgatGAAGCCTTACAGAAGGAATTTGATGATGTCAGATGTGCAAGTCAAAGACTTTTTATTGAACATAGCTCCCCCAGCTCAATTGACACTTCGAGTGATGAAGATAGGAAAAGCGTCAAAAGAAAACGTGACAAAGGTTCCAGTTGTGAATGTAAAACTGATGAACATCAGTTAACCATAGAGGATATATACACCCAAGACAAATACCCCTCTAACTTCAGTAATAGCCATAGTCCTGTCACAACAACAGACCGAAGGAAGCAGGTTAAAATCTTAGGGGCTTCCTTCAAGTCTCACAAATCTTCAGACATTGATAAAAAATGTAAGAATTTTGCATTGAATACAATCCCCAAAGTTTTTAATGATTTGACCCCATTCAAAGACTGTGTAACAGAAAACTCTGTGGTAAACATTTTGTTTCTTGTGACACAAGTCAATGAAACTCGTGATGTAAAGATCAAATCTGGTACTAATGCCGGAAGTTTTGTAGCAGTCTCCTCCCTTCTGGTTGCTGATGAATCAAAGTCTGCTTTCAAGTTGACACTGTGGAGAGAGGCTTCAAGTTGGACAGATAAGATATGCATCGGTGATTTTGCTGTTGCAACAGGAGTTAAGGTTGGAAAATGGCGAGAGGAATTTGTTGGGCAAACCACATTTAAGTCTAGCTTCTTCAATCTGCATCAACCAGAAACCATTTTGTCAAATGCTTGTCTTAGATTAGTGTCACAAGAAAGATTCAACAGTATTTTTAGATGGGCAAGGTCAGAACACCCTTACTTTTTTGCCGTTTCTCGTGTCACAAGAACTGTAGAATTTACTGAAATGGCAAGGTTACGAGACAACACTTTGGTGCACTTCAGAGGGAAGGTTATGAGTGTTCATGGAACTTCTGCTTCAAGTACTTACCGTTTTGGTGATCAGCAGCTGTCCAAGATTACAGTTGTTTTGGCTGAACGACCAGGTGACATGATCAAGCTTTTTCTGTGGGGAAGACAAGCTAAGTGGATGAATCAGATACAAGAGGGTCTTGGAAGAGTTTGGGAGTTTAAGTATGTCACAGCGAAATACAGCACGGATACCGGGTGTGTCTCCCTGCACACGACACCAAGGTCGACAAAGACAAAGCTCATCGCAGAAGACAAAAATGCCAGATTAATTGTGCCACAATTTGAGGATAACGCCCATCAGAGGAGAAAATTCTCGAACCTAAGTGACTTGTTGGGGTCAAAGTATATTGGTTTAGCCGAAGTTGATGCTGGGATTACGTCGCTGCAATTTCACTGTGAATCAGATAAGACTATTATCGTTGACCAAACGGAGTCCGCTATCAATCAACTCAAAGGAAAGATTGACAAGTTAGTTTACATCGGTTGCGGGTCGTGCTCTCGGGCTCTTGTCCAAGATCACAACGGTGTTTACGGTCAATGTGTCTATTGCGTCGTGGCGAATCCCGGTTACCGATACGCTATTGACTATTATTACAAACCAATGACGATTTTTGTGAACGACTCTTGTGTGGCCTTACACGTGGAAGCATTTAGTCGCGTCGTTTCCCACCTTTTTGAACAATTTCCTGCAAAGTCATTGGCCCAAAAACCTGTCAATGCTTCGTCACATGACTCGGAATTTGAAGATAGTTTTATTGGGTACTTAAGAGGGATTGTCAAAGGAAAAAGGCGTTCGATGCTTATTGCCTGTCATGTGGACATCGATGAAAACAGCTTCGTCGAGAGCAGAGCTTTCACTCTCCAAGAATTAGATGTCTTAAATGTCTGA

Transcript

BRAKERNUST00000031883

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009323 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15793 all species →	SHLD2_C	Shieldin complex subunit 2, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029715 all species →	Family	Shieldin complex subunit 2	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR031589 all species →	Domain	Shieldin complex subunit 2, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14495 all species →	SHIELDIN COMPLEX SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010569 all species →	Biological Process	regulation of double-strand break repair via homologous recombination	Interproscan
GO:0035861 all species →	Cellular Component	site of double-strand break	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000031883.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.