Gene detail

Detailed information of BRAKERNUSP00000032262.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044164183.1, calcium homeostasis endoplasmic reticulum protein-like isoform X4 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000032262

ATGGCAGGTGCTGTGATACACAATCCCCCGTTCCCGGCTCCAGAAGACCAAGAACAGAAGAATATCATTGACAAACTTGCAAACTTTGTGGCAAGAAATGGCAGCAAATTTGAAGAGATGACCAAGGAGAAGCAGAAAGGAAACCCAAAGTTTGCATTTCTGTTCAGTGGAGAGTATTACAACTATTACAGATggaaagtttcttttgaaatAGCCCAACAACAGACTCAGCAACATCTAAAAACCCAACAACAGCTTGTCCAACAAGCAGCGGCACAATATGGAACTAACCCTCAGGCTCATTTGGTGCAACAGGCTATTGTTCAGCAGTCAATCAATTCAGCACCGTGGCAACAAGCTCAGCAACAAGCTCAACAGCAGATGCAGGTTCTACAGCAGCAACAAGCTCATGCTGCCAATGCTGTTCCCTTGTACCAAACCCCTGCAGCTCCTGTCCAACAAGCAGTTGATTTAGATATTACAGAACTGGAAACTCTCCTTTGCAAAATCATGGAGTCCTGCACCAAGGAGTCCATATCGAATGGCAAAAATTTCATCTTTTCCAATGCCAAGACACCTGCACACTGTTATGAGATATCCCAGTACCTTCTCAAAAGAGCCCTTGGCCCTGGAATGCAGTTTCAGCACAAGCTTCACATTGTTTACCTCGTCAATGATATTTTGCATCATTGTCAGAGGAAAGGAGCCCAGGATTTACAGGAAGCTCTTAATGATGTTGTAGTCCCTGTGTTTTTTGTCACCCAACTTGGTGAATCACAAGAGAACCTACAGAAAATTACCAAAGTGTTGGGTATCTGGGAAAGTCATAACCTATTTGAACCAGCTCTGTTGCAGAAACTGAAAAACACAGAAAATGCTCAGAGTATAGTTGATGCTGCCCGAGATCAAGTTATTTGTGCCCAAGaCAATTCAGCAGGCCAGAAAGTTGATACAACCACACAAGAAAATAATGATGAAAGGAAAGAACAGGAAAAAGATATCATCAAAGAAGAGGTTGCAGAGAACAAAGCAGCAAATGAGCCAGATACGAGGGAGGAGCCACCCAGACAACAAGCGTACCCCCCGGGACCATATCAGCACCCCCCTGCCTTTCCTCCCAGCTACAGTGAACAGCATCCACCATACTATGGCCATGGACCTCCCCCGTTTCCACATCATTTTCCTCCTCCTCCAGGCTACATGCCGGATTTCCATCGCCCTCCTCCAATGTTTGGCCATCCACCACCTCCAGGTTTTATAGATGAGGGTTTCCATGCAAGGCCACCCCCGTTTCATGGTCCGCCACAGCAGTTTGATTATCAGCAGCAAGAATATGACAAGTATGCCGAACGCGGTCCACCACCTCCTCCTCCCCCGATGCTGAATGAATATAACCACGGAAGACCAGAAGATGAAGAAGGTTACAGCATGGATGAGTACGACATGCCTCCCGAGCCACCCATCCCTGAGCCTATTATACCTTCAGCAATGTACTATGAACTTCCTGCTGGACTCATGGCCCCTCTAGTTGGGTTACCAGATGTAGATTACAAACCAATTGATGCCGCTGCTCTTCGCCTTCCCGCACCTCAACCACCAAGCGAAAGACTCCTGGCTGCAGTTGAAGCGTTTTACAGTCCCCCGAGCCACGAGAGACCAAGGAACAGCGAAGGCTGGGAGCAAAGTGGTCTGTTTGAGTTTTACAAAGCAAAGTTAAAGTATATCAAGGATCGTGAAGAGGCCGAGAAACACAAAGTGCAGGAAGTCCAACAAAGCAGGTCAAGATCAAAAGTTAATGCAACATATAAAGAACTCGGCGTTGCAGAACTGCAGTGGCCAGCTGAAGAAGAGAGAGAGCTTACTCAGGAAATTGTGCGAGTCAATCCACTAAGAGGCCAGTCAATTCTGCAGGCATCCAGTTACAAGTATCTTGTCAGTCATTGGGGTAAAACGTCATCATTAGTTGCCAGTTTGGCGGGAGATCCTTTGCTGCCAGATCACAGATGTGGTAAAGGAGAGATCAAGAAAGAATGTACTGATTGCTCAGTGAACAGACAGGGAAATAATACGACAAGGAATGCTGGAAAACCTTCCACAAATTACTGGACATTGCTATCAGATGAGATTATTCTCACAATTTTTCAACTCTTGTCCAAGAAAACAGTGGTCAAATGTGCACGCGTTTGCAAGCATTGGCAGAGATTAGCctaTGATGAAACCCTTTGGTGCTGTGTGGACATGACAAAAGCAAACCTTTTACCTGGACTTTTAGGGAAAGTATTAAAGCGAGGGACTAGAGTTTTACGTTTAGCTCAAGCAAAGGTTGCATCTCCTCTATGTGATGACAGTTCTTCATCATTCCTTGATGTGGCTCCTCTATCACCTCAGTCACAAAGTGACTCCTTGTTCCGCCTGCAATATTTGGATGCTACGGGTTGTTCGTTTGAGAAAGACACACTTTTATGTCTTCTTTTGcATTCCAAACAATTAACCCACATCAGTTTGGAATCCTGCAATGTTTCTACAAGCGTGCTAAAAGCTGTCAGTGAATTGCGACATCTACAGGTTCTAAATCTTGCCATGTGCACTGGTGTTACAGTAACAGGAATATGCTCATTGgtaaaaagtggaaaaaacaCCAGACTCAAACAACTCAATTTAGCATGGACAAACTTGACAAAGGCAACTATTTTACAGGCTGTGAAAAATATGCCAAACCTCCAACGTCTCAACCTCAGTGGATGCCGTGAAACATTAAGAGATGACTGTGTCAAACAACTGGTGAAATCATGTCCTCTCTTAACTCATTTAGACCTTAGTGATGCATTCAACTTAACAGCAAAGGCTTTAGAAGATATTCTTAAACTAGAAAAACTTGTCCATTTGAGTCTGAGCAGATGTTACAGCATTCCTCCTGCAGCCTTCAGTTCATGTTCTCAGAGAAAATCTCTTAAAAGTTTGGAGATCTATGGTTTCCTAAATTCAGAAGGAATAGAGGTCTTGAAGAAGGAGCTTCCACACATCACAGTCAACAAGTCACTTTACTCATCAGTTGCAAGACCAGTTGGAACAATGTACTTTGGAAAGATATGGGAAGTACAATGTAAAGACTAG

Transcript

BRAKERNUST00000032262

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IWX8	Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens OX=9606 GN=CHERP PE=1 SV=3
Q8CGZ0	Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus OX=10090 GN=Cherp PE=1 SV=1
Q13309	S-phase kinase-associated protein 2 OS=Homo sapiens OX=9606 GN=SKP2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004389 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|F-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF04818 all species →	CID	CID domain	Repeat	Interproscan
PF01805 all species →	Surp	Surp module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR008942 all species →	Homologous_superfamily	ENTH/VHS	Interproscan
IPR000061 all species →	Domain	SWAP/Surp	Interproscan
IPR039037 all species →	Family	Calcium homeostasis endoplasmic reticulum protein	Interproscan
IPR035967 all species →	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR006569 all species →	Domain	CID domain	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12323 all species →	SR-RELATED CTD ASSOCIATED FACTOR 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0006874 all species →	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14972	PAXIP1, PTIP; PAX-interacting protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.