Gene detail

Detailed information of BRAKERNUSP00000032262.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_044164183.1, calcium homeostasis endoplasmic reticulum protein-like isoform X4 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000032262

ATGGCAGGTGCTGTGATACACAATCCCCCGTTCCCGGCTCCAGAAGACCAAGAACAGAAGAATATCATTGACAAACTTGCAAACTTTGTGGCAAGAAATGGCAGCAAATTTGAAGAGATGACCAAGGAGAAGCAGAAAGGAAACCCAAAGTTTGCATTTCTGTTCAGTGGAGAGTATTACAACTATTACAGATggaaagtttcttttgaaatAGCCCAACAACAGACTCAGCAACATCTAAAAACCCAACAACAGCTTGTCCAACAAGCAGCGGCACAATATGGAACTAACCCTCAGGCTCATTTGGTGCAACAGGCTATTGTTCAGCAGTCAATCAATTCAGCACCGTGGCAACAAGCTCAGCAACAAGCTCAACAGCAGATGCAGGTTCTACAGCAGCAACAAGCTCATGCTGCCAATGCTGTTCCCTTGTACCAAACCCCTGCAGCTCCTGTCCAACAAGCAGTTGATTTAGATATTACAGAACTGGAAACTCTCCTTTGCAAAATCATGGAGTCCTGCACCAAGGAGTCCATATCGAATGGCAAAAATTTCATCTTTTCCAATGCCAAGACACCTGCACACTGTTATGAGATATCCCAGTACCTTCTCAAAAGAGCCCTTGGCCCTGGAATGCAGTTTCAGCACAAGCTTCACATTGTTTACCTCGTCAATGATATTTTGCATCATTGTCAGAGGAAAGGAGCCCAGGATTTACAGGAAGCTCTTAATGATGTTGTAGTCCCTGTGTTTTTTGTCACCCAACTTGGTGAATCACAAGAGAACCTACAGAAAATTACCAAAGTGTTGGGTATCTGGGAAAGTCATAACCTATTTGAACCAGCTCTGTTGCAGAAACTGAAAAACACAGAAAATGCTCAGAGTATAGTTGATGCTGCCCGAGATCAAGTTATTTGTGCCCAAGaCAATTCAGCAGGCCAGAAAGTTGATACAACCACACAAGAAAATAATGATGAAAGGAAAGAACAGGAAAAAGATATCATCAAAGAAGAGGTTGCAGAGAACAAAGCAGCAAATGAGCCAGATACGAGGGAGGAGCCACCCAGACAACAAGCGTACCCCCCGGGACCATATCAGCACCCCCCTGCCTTTCCTCCCAGCTACAGTGAACAGCATCCACCATACTATGGCCATGGACCTCCCCCGTTTCCACATCATTTTCCTCCTCCTCCAGGCTACATGCCGGATTTCCATCGCCCTCCTCCAATGTTTGGCCATCCACCACCTCCAGGTTTTATAGATGAGGGTTTCCATGCAAGGCCACCCCCGTTTCATGGTCCGCCACAGCAGTTTGATTATCAGCAGCAAGAATATGACAAGTATGCCGAACGCGGTCCACCACCTCCTCCTCCCCCGATGCTGAATGAATATAACCACGGAAGACCAGAAGATGAAGAAGGTTACAGCATGGATGAGTACGACATGCCTCCCGAGCCACCCATCCCTGAGCCTATTATACCTTCAGCAATGTACTATGAACTTCCTGCTGGACTCATGGCCCCTCTAGTTGGGTTACCAGATGTAGATTACAAACCAATTGATGCCGCTGCTCTTCGCCTTCCCGCACCTCAACCACCAAGCGAAAGACTCCTGGCTGCAGTTGAAGCGTTTTACAGTCCCCCGAGCCACGAGAGACCAAGGAACAGCGAAGGCTGGGAGCAAAGTGGTCTGTTTGAGTTTTACAAAGCAAAGTTAAAGTATATCAAGGATCGTGAAGAGGCCGAGAAACACAAAGTGCAGGAAGTCCAACAAAGCAGGTCAAGATCAAAAGTTAATGCAACATATAAAGAACTCGGCGTTGCAGAACTGCAGTGGCCAGCTGAAGAAGAGAGAGAGCTTACTCAGGAAATTGTGCGAGTCAATCCACTAAGAGGCCAGTCAATTCTGCAGGCATCCAGTTACAAGTATCTTGTCAGTCATTGGGGTAAAACGTCATCATTAGTTGCCAGTTTGGCGGGAGATCCTTTGCTGCCAGATCACAGATGTGGTAAAGGAGAGATCAAGAAAGAATGTACTGATTGCTCAGTGAACAGACAGGGAAATAATACGACAAGGAATGCTGGAAAACCTTCCACAAATTACTGGACATTGCTATCAGATGAGATTATTCTCACAATTTTTCAACTCTTGTCCAAGAAAACAGTGGTCAAATGTGCACGCGTTTGCAAGCATTGGCAGAGATTAGCctaTGATGAAACCCTTTGGTGCTGTGTGGACATGACAAAAGCAAACCTTTTACCTGGACTTTTAGGGAAAGTATTAAAGCGAGGGACTAGAGTTTTACGTTTAGCTCAAGCAAAGGTTGCATCTCCTCTATGTGATGACAGTTCTTCATCATTCCTTGATGTGGCTCCTCTATCACCTCAGTCACAAAGTGACTCCTTGTTCCGCCTGCAATATTTGGATGCTACGGGTTGTTCGTTTGAGAAAGACACACTTTTATGTCTTCTTTTGcATTCCAAACAATTAACCCACATCAGTTTGGAATCCTGCAATGTTTCTACAAGCGTGCTAAAAGCTGTCAGTGAATTGCGACATCTACAGGTTCTAAATCTTGCCATGTGCACTGGTGTTACAGTAACAGGAATATGCTCATTGgtaaaaagtggaaaaaacaCCAGACTCAAACAACTCAATTTAGCATGGACAAACTTGACAAAGGCAACTATTTTACAGGCTGTGAAAAATATGCCAAACCTCCAACGTCTCAACCTCAGTGGATGCCGTGAAACATTAAGAGATGACTGTGTCAAACAACTGGTGAAATCATGTCCTCTCTTAACTCATTTAGACCTTAGTGATGCATTCAACTTAACAGCAAAGGCTTTAGAAGATATTCTTAAACTAGAAAAACTTGTCCATTTGAGTCTGAGCAGATGTTACAGCATTCCTCCTGCAGCCTTCAGTTCATGTTCTCAGAGAAAATCTCTTAAAAGTTTGGAGATCTATGGTTTCCTAAATTCAGAAGGAATAGAGGTCTTGAAGAAGGAGCTTCCACACATCACAGTCAACAAGTCACTTTACTCATCAGTTGCAAGACCAGTTGGAACAATGTACTTTGGAAAGATATGGGAAGTACAATGTAAAGACTAG

Transcript

BRAKERNUST00000032262

Protein

Uniprot

Gene family

Uniprot term	Description
Q8IWX8	Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens OX=9606 GN=CHERP PE=1 SV=3
Q8CGZ0	Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus OX=10090 GN=Cherp PE=1 SV=1
Q13309	S-phase kinase-associated protein 2 OS=Homo sapiens OX=9606 GN=SKP2 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF04818	CID	CID domain	Repeat	Interproscan
PF01805	Surp	Surp module	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR000061	Domain	SWAP/Surp	Interproscan
IPR039037	Family	Calcium homeostasis endoplasmic reticulum protein	Interproscan
IPR035967	Homologous_superfamily	SWAP/Surp superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR006569	Domain	CID domain	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12323	SR-RELATED CTD ASSOCIATED FACTOR 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0006874	Biological Process	intracellular calcium ion homeostasis	Interproscan
GO:0048471	Cellular Component	perinuclear region of cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14972	PAXIP1, PTIP; PAX-interacting protein 1	-	Chromosome and associated proteins	ko03036	deepkoala