Gene detail

Detailed information of BRAKERNUSP00000032564.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044183442.1, ESF1 homolog isoform X1 [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000032564

ATGGACGTCGATCTCAGATTCGCCCGTTTCGCTCAAGATCCACGGTTTAGAAAGATTTCACGGAAAGAGAGGAAAGTCAAGATCGATGGACGATTCAATAAAATGTTCACAGACAAGGGTTTCACAACAAACTATTTTGTTGATAAACGAGGGTCAAAGGTCAAGAAGACTTCAAAAGAAGACTTACGCAAGTTTTATGCAATGTCTGATGAATCTGACAAAGAGGATGAGAAAACAGAACCGGATGTGGAAGAACATCAAGATGATAAAAAGGGTGAAAGGCAGAAGAAAGGCTCAGAGTCCAAGAGGTTTGATGATAGTATTTTTGAATTATTGCATTCCTGTGTAGTGATGTACATTAGTCTACATACCTCTTACGGACTTAGTTTGAGAAAAAGAGGCAATAAAGATGTAGAGGGTGGAACATCTGATGTGAATCGTGAAGTTCAAGGCAATGATGAAGAAAGGGATGATGAAGGCATTTCAAAGATGGAAGACAGAGATAAAgttaaagatgatgatgatggtgattcTGATAGCAGTTCTGATGAAGAAGTAGACATAGGCAGAGGTGAAggagatttgatgtcatcatcAGACGAGGAAGATGACGAAGGACTCGATTTTCAAAAGGCACAGaaTGAGATAGAACATCCATGGGGAGAAATGAACGTTTCAACCAAAACCACACAAGAGACAACCAGGCGTCTTGCATTGTGCAACTTAGACTGGGACAAAGTGACAGCCACCGATCTGTTTGtCTTGTTTAATTCCCTTAAACCCAGAGATGGCACCATTGAAGCTGTTAAGATCTATCCATCTGACTATGGCTTGGAACAAATGAGATCAGAGGAAACCCTTGGACCTGTCCCGCTGAAAGATGAAGAAGCTGATGATGAAAAAAACATAGGAAACAAAGAAATCGTGGAGGCAAAGTTTTCGATGGAAAAACTGCGCCAATACCAATTAAACAGACTCAAGTACTTTTACGCTGTCATCGAGTGTGATACACCAGagacTGCAGGAGTGCTTTATGAAGGATGTGATGGAATCGAGTTTGAACTGAGTGGCAACGTGTTGGATTTGAGGTACATCCCAGATGATATGGAGTTTGACCACGAGCCTCAGTCCGTGGCCACAGAGCTACCAGCCTCAGGCTCTTACATCGCACCAGAGTTTTCTACAACAGCTCTTCACCAGACAAATGTCAAACTAACCTGGGACGAAACTGACCCAGGACGACAACGCACCACCATGAGAAAGTTCAACAAAGATGAAATACTAGAGATGGATTTTAATGCCTATCTGGCGTCCTCATCAGATGAAGAGGAGTTGGAGGGAGGAGAGGAAAATTCAGATGGCAAGGAAGAGTCAGATGAGGATGAagacaagaaaattaataaatacAAGCAACTTCTGAGAGAAATCGAGAACAAAGAACACAAGGCCGATAGAGAACAAGAACTTGAGATTACGTGGGAACCGGGCCTGCGAGAAGCCACAGAGGAACTGGTGACAAATAAGAtaaaggagaaagaaaagaagaaaatggcGCCATGGGAAATATATCtacaaaataagaaagaaaaaaggaaagagaaacgaatggaaaaggaaagtaTTAAGAAACGtttatcAGGGAGAGAATCTGACGAGAGCTACGATGTTCCGTCAGACGTTGATTTGTCTGACCCGTTCTTCAGTCGAGAAATTGATGCTGGGATAAATGAAGACGAGAATAAAACATCCGCTAAACCTAGAGGGAAACGGAAACGTGGAGACGTTGAAACGGAAGAAGATAAAAAAGCGAAGGAGGAGCTAGAACTTCTTTTAATGGAGGATAAAGATGACCGACAGCATTTCAGTCTCAAAGGAATAATGGACAGCGAAAAGAAGATGAACAAGAAaagacgaaaaagaaaagaaaaagaagaggaaattgTGGAGGATGATTTTAATGTGGACTTGAAAGATTTTCGGTTTGATGCGCTCTTCACTTCTCATCACTTCGCTGTAGATCCTTCAGATCCACAGTACAGGAAAACAAAAGCCATGGAAACAATTATACAGGAGAGacagaaaagaagagaaactgGTGAGATAACGCCAAAGGCCAACCATGAAAAAGGTGCGTAA

Transcript

BRAKERNUST00000032564

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76MT4	ESF1 homolog OS=Rattus norvegicus OX=10116 GN=Esf1 PE=1 SV=1
Q9H501	ESF1 homolog OS=Homo sapiens OX=9606 GN=ESF1 PE=1 SV=1
Q3V1V3	ESF1 homolog OS=Mus musculus OX=10090 GN=Esf1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004031 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08159 all species →	NUC153	NUC153 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012580 all species →	Domain	NUC153	Interproscan
IPR039754 all species →	Family	Pre-rRNA-processing protein Esf1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12202 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000032564.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.