Gene detail

Detailed information of BRAKERNUSP00000032989.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_029193630.2, putative RNA-binding protein EEED8.10 isoform X4 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000032989

ATGAGTAGACGTTCTCCAAACTTGGACAAACTCAGAGCGCTTCACAGGCAGGAATGTAACAAGGGTCTGTTTGCCGCATTAGCAGATGACAGTACTAGTGTTCACGCGGAAAAACCTGTCACATTTGTCCAAAACAGTAACTGTCTCAATAGTGGAATAAGCCCTTTACAATCTACAGATTTAATACAAAAAGCTGAGGAATTTTGTCGCCAAACTCGAATAGTTGCAAATAAGTGTAAGGTGTTTGTTGGCAACGTGAGTTATAAGGTAAAATCAAGGCaattgaaagaatttttcaaCTCCTTTGGAAAAGTGATTTACGCCGAAGTCATAACGGATCGTAAAACGAAACGTTCTCGAGGGTTTGGATTTGTCACATTCAGCAATGAATGGGATGCAGAGAGAGCCAAGAAATCTTCAGATGAAGAACGAacattagaagaaagAGTCATGAAAGTCTGCGCAccagagagaaaaaaatcagGAAGGAAAGTATTTGGCCAAGAAACCAGTTTGGAGAAGGCTCTGGAATCCTATACTTATAATGGAGGAAAGGAGGAAAGAGATGTCGCAATGGAAGATGAGTGTCACAGCAGTGACAGCAAGACACTTGATACTGAGCCAGCAATATTTCAGCTTAATGAATATACCATGCTTCACATTTTCCTGTATTTACCTGCAAAGGATAGGGTATGCATTGAAAGGGTTTGTAGGAGATGGAGAGTGCTAGCCATTAAGTCATGGCATCATACCAACCATCTTGACTTTCAAGGAGCTTTTGCTTCGTTCAGAGGTGTTGGAGGTCTCACTGATGAAGTTCTGTGGTCGATTCTAAGACGAGGCTGTCAAAACCTGAAGTCATTGGATTTGTCTCTTTCACCTCATTTCCTGACAGATTTTGCGGTTCTTTGTATTGCAAAACAGTGCAAGTCGTTGAAAGAACTAAAGTTAAGTGGAGTTGATGTCAGTACATCCTCATTAAAAGCCttgtccaaaggctgtttgGACCTGGAGaaAGTAATTCTTCAAAAGTGCTATAAAGTTGGTGAAAAAGCGCTCTGGTGGCTTTTTAAGGAGTGCAAGAAACTTACTCACATCAATTTACAAGGAAACAGAAGTCTTAAAGGCCAGTGTTTCTTTATGCTGCCACCAACATGTGTTGAGCTGAATCTGAAAGAATGTAATCAGCTGACAGATAAGGGAATGGACCATCTCAGTAATAAATGTAAAAACTTGAAAAGCATTGACATCTCGGAGTGCATGATGCTGACAGATGAGGGAATCAATCAACTCACACAGAGAGAACTGGATCTTTCCTATAATTCTGTGGTAGATGACTTAGTACTGTACAGCATTGGAAGAAACTGTATTCATCTCTGTTCTCTCAAGCTGGAGTCTTGTGAAGACGGAGTCACTAATGCGGGGTTGCAGTGTCTCGTGTCCTGTTATCAACTGTCTTCTCTTGTTATTAGCTATCTACACAAGATTACCGACGAGGGCGTGGTCAAGCTAGCCGCTAATGGCACCCTGGAGCGAGTTGTGGCTCGAGGTTGTACTGGACTCGCTGATGCATCAATCGAGAGTCTATTAAAGCACTGCCGTAACTTGACGATCTTGGATATTTGCGGCTGCACTGGAATCACAAACACCACTCTCGAGCTGTTTACTTTGTACTGTGTGTCTGACGATCGACCGCTTCTTACTTGCACGCTCGGAGGTACAGCCGTTGATGAAAACGAAGTCTTCCGGGTGCAGCCGACGTTGTATCAGTGCCAGCTTCTTCGTAGTGATTTCTCCATACCTGAAAAGACTGAGGCTGTGCCGTCGTATGGTTCAGGTGCCTTCTATCGCGAGGAAGATGAAGACGATGATGGCGAGTCAGTTGAAGATGAACTGGAGGATTTCGTTGATGACGAAGAGGATGAAGATGACACAGACTTCCATAACGTTCTTGATGACGAGGAGCTTTGGATGGCCGAAGACTCATTGTGGTGGAGACCAGACGACGCGGTGGACTTCCTGGAGGCCGATTATCCTTCTTTATTAGCAGAGCAGTTGTACAGATCGTGA

Transcript

BRAKERNUST00000032989

Protein

Uniprot

Uniprot term	Description
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2
Q28IQ9	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1
Q9DED4	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala