Gene detail

Detailed information of BRAKERNUSP00000033006.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_029193978.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114959946 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000033006

ATGACAGTACTTCTTGGCAATAAGGACCTGTGGGAAAAATTCAGAGAGCACCAGACAGAGATGATTATTACAAAAGAAGGAAGgcGCATGCACCCAGTGATATCATTGAAATTCCAAGACCTTAATCCCAGGAAAATGTACGCAGTTATGATAGACTTCGTTTGCGCAGATGATTACAGATACTGCTTTGATTTGACGTCCAATCGGTGGGCTCCTTGGCGCCAACCAAGGTCACATGAAGACGTCACAGGACCCAGAATGTACCTGCACCCTGAGACCCCCAGAGCTGGGGACATATTGATGAGAAGCGTGCTGACTTTCAAAAGGCTTAAGCTGACAAATAGTTACCAGACGGCTACCAAAACAATCCAAGTGCTGTTGCTGAATACCATGCGGCGTTATTTTCCTCGAATCCATTTGATTGAGAGTGTTGATGGCACGAACTTTGACTACCAAATGCGAAaggagttttgtttccccgaaaCGGAGTTTATTGCTGTGTCATCGTACAGAAACAAACAGATCACCAAACTTAAGATAGACTCGAACCCTTTTGCTTCCGCTTATCGAAGTGAAGGACTCCATGGGAAGGCAAAGCGGCTCCGTATGGAACCCAGCGACGATGTCGATGACGAAGAAAAGGGTTTGAATGACAATTCATCATACAACGGTTCTGGTGATGAAGACAACCTGAGTGATAACAGAGAAGAACATCACATTGGAGATAATTCCTCTCCGAATGATCATTCAAGTTTAGAGAATTCCGACCCGTCACAAAGGTACGACGAGCAACAGTTGAACGATATGCAAGCAGTGCTACCATTTCTCAAGGATCGACTGAAAAGAGATGTGTCGTTCTTCGTGTACAAGCCAGCCAATAGTTGGGGATGTAACCGAAAAAGGAACCCAGATTTGTCGCATCCAGGCGACAATCAACTCAAAAGCCTTATCAAAATAAAGATCAAGTCACGTTTATCTGGTAGGGAATCCGCACAAGATGCACGGAAACAAAATGAGCCGACGTCTTCGGACAGCGGTTCTGGGTATTTTGATTCTCAAAATAGTCTCTTACATGAGGCAGCCGAGCCTGGAAATGCGTCGCAGACTGGTACTGAAGTCAGTGGTGCAGTAAACGTGGGGAAAATGGGTGACGAGATTAGTTCTGCTTTCCAAGGAAGATACAACAGGAGAAAGAAATACTTGCCCCGAAAATTGCAAAGAGCAAACGACTTGAATGTCGAAGTCAAGAATAAGAGAAACACTGCAAGAAGTTCTGGAGAGCTCGATGGTGAATCTTGTTCGAAGGGGAAGGACGTAGTGTCTTCCAAATTGCAGGACGAATCTGAAAATTCCTCGGTTTTAATCGCCAGCTCTCAAGACAAAATAGATGATGTATCATTGTTAGCAGAATGTAGTAGGGAGTCAAGAATACGGGACATGGATGAAAGTCCCCTTCTGGAGAGATTTGAGACTGCAGACGGAGCGTCAGTCGACAGGCACACAATCACAGGAAAGTCTGGTGAGGAATCAAGAGACAGTCCACGGCTCACGCAGAACGACCCCAGCGCCGATTTGTCTTTAGCCAGTGAATCTTCTGCGTTAACGCTCGCTTCAACACCTCAAGAAACAGCGGACTTTTCTCTCAATGCTCTGATTCAGATGTGCTCTAGGGCGGAGGGATCTTTGAATAACAGTTCCTACCATCCTGGATGCAATGAACAACGCGACGTGCCCTCCACAAGACCCTCCTTTCAATGTCCTCTCGTTTCACAATTACCCGGAGAGACATCCATGATGCATTTTGCTCAATCCCTTCCTTCACAAAGTCAACAACGAGGCGAATTTCCCAAAGATGTAGATGTTGGTTGTTTTCCTTTACAATCATTCGGAGGTAACGAAAGAAATATAACCTGTCTGGCATCTGGGGCCTACGAAACACACCCTTTACCTCCTCCATTGTCTACTTCGTCCACTGAAGGCGTTATGCACAATGTAAGCTCGTTACGAGTAAACACATCAGGATTTACTGAAGTTAGTGGCAGTGGTGACACTCATCTTCAAGGCGAAAAGGTTCAAAGTGAAAAGAATTCGACGTCATCGGGTCGATATCAAATTATTTCTAGCGAAGCTCTGAAGGAAACACCGTTTTCTATTAATCCAATCAAAGTGAACACAGGTTCAAGTTACAGGAAAGAATCAGGCATCAAACGCATTCCTGAATATCGGCCAATAGCTCCCGCTCCAAATCAATCTTTGGGTGGGAGAATCCAGCAGGTTGGAACATGTGGCGATCATTTCAATGACGACGCTACGTATCCCGTAATTATAGACATCTTCTCGCTCAACGGAAATACTCAATCTGTTGCCGCAAAAAATGAAAGCGCGAAAGTGTCATCTTCCCATTCCAATTTTCAATTCCCTCAGAATTCACGTATACCTCTGGGTAGCAATACACACTTTATCGCACCAAACTCATACGAAACGAATCAAAGTGGTAATTCTGGGTTAATCGCTCTCGACAGCACTGTATCTCTGCAGGCTCTTTCTCTTGAgaaattttattcttttacttCAGCAAAACCGAGAAGTGAAGATCACGAAGCCTCGTCCTTCTCGCGATTTCGTGGAACTCGTCATTACAAGACCACACGAACAAATTTCAGTCGTTTAAGCTTGGAACCATTGTGCAGTGTGATTTATCCACTGACAAGGTAG

Transcript

BRAKERNUST00000033006

Protein

Uniprot

Uniprot term	Description
Q64336	T-box brain protein 1 OS=Mus musculus OX=10090 GN=Tbr1 PE=1 SV=2
Q16650	T-box brain protein 1 OS=Homo sapiens OX=9606 GN=TBR1 PE=1 SV=1
Q9IAK8	T-box transcription factor TBX5-A OS=Danio rerio OX=7955 GN=tbx5a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001699	Family	T-box transcription factor	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan