Gene detail

Detailed information of BRAKERNUSP00000033462.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029192141.2, zinc finger protein 26-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000033462

ATGAGCCAGGGAAATTTTGGTTCGAGATCTGGGCGAATAATGGAGTCTACAGCAACATTGgcagacaaaaaaggaaagtcaCATTTCTTCCATGCCCGCAAAAGTGAGAGAAATAAGTGTTCTTGGCTTAGTCGTCTTCAGAGCGCAGCAtcagaagaagaacagaataTTGTGGCATACGAATCTTCCATGAAAGTCTACCTTGAAGCTATTAAAGACATTGCTGAAGGAGAGGAACTGATGGTGTTGTTTGATGACTCATTTAGAGAAAATGGACCTACCATGGAAGCTGTGCCAAGTGTCTCCTACATTACTGATGAAAGTGGTGGACGAATCGCTGTCGTTCCACTTGACAGAAAAGTTGATGAGTCAAAAGTTTATGTTAATCCagttgatgataatgataatgacaatgatgatggaGTAGAAAAGGACGATGGCGATGATGACAGCAGTAATGATGGCAGTGATAGTGAAGGAGATGAGCTTTATAAGGTAACGGAGGAAAGTTGTGGTGAACAAGACACTGAAATGGAAGATGATAGCaatggagatgatgatgatgaaaatgatgatgaagatgatgatgaagatgatgatgattttattCCAAACAGTCTACCAAAGTCTACCAAAAATACTATTAAGAGGAAAAGGAGTTCTGGTAATGACATTGAGGTGTTGGAGGAAATCATcgtcaaaaagaagaaaaagcaacCAAAGATCAAGGAACTGACTGTCATTGGTCCTGAATGTGAAGCAAACGCGGTCAAGTACTGCTGTGCCCACTGCTTGGAAGAGTtcagagagaaagagaaagccCTAGAGCACAGTGCTGCCATGGAATGTCTTTCAAAAGAGTTCCAGTGCAGCACATGTACGCTGGAGTTCACAAAAGCCTCTTTGCTGCAGAAACACCTTTGTGGAGGAAAACCTATCTGTAAAATTTGTGATGAAGAATTCGATGAAGTTGCGCAACTTCAAGCTCACGAGAAAAACCCTCCAGCAGATCATCTGCCAAgGTGTGCGAAGTGCGATGTGCAGTTTCCAAACCAGAAAGACAAGTGCCGGCATGTCCGCGCTAAACACAGTTCAACAGAAAAGCAAGCAGAATGCCCTATCTGCCACAAGACTTACAACAAATCCTACCTCAAGGAACATGTGATAATTCACAGCCAAAGTGATGCGCTGAAGTGCCAAGAATGCGGAAAGACGTTTTCATCCAAAAGCAATTTGAATAAACATCGTAAAAAACACGCACCCGGGTATACACCGAAGTCATCTAAGCAGCGAGAGAAGAAATTCATTTGCCCCGAGGAAGGCTGCGAGAAGACGTTCGACTCACAACATGCCCTGAAGAGCCATCAGAGGTGTCATACAGGGGAGAGACCATTCCAGTGTGAACAGTGCTCTTGGAGGTTCACTCAGAAAACACACCTGACCCGGCACATCAAGAGCGTACACGAAAAGATCCCAAGGTCAAAACAGTCGAAAGGAGGCTCCAATGCGCCCGTGACTTGTGATATGTGTAACAAGGTGTATGTCAACAGTCGCGTCCTGTCGGTCCACATACAATCCGTGCACGATGGTTTACGTCCGTATAAATGCGATTACTGCGATGCCACTTACACTCAACGAGGTCACCTTTGGCGGCACAAACACGCAAGTCACTTCGAGAAGGAAGAAGTACAAAAGAAATACACCAGCGACAAGTTTTGCTGCAATTTTGACGACTGCGAACAAGTATTCGATGCGGAACCGGAACTAGTGGAACACGTGAAGACACACCAGGGTACCACAGACAAGGCCTGTATGTGTAGTGAGTGCGGGGCGACTTTCGCATCGCAACAAAATTTGTGGAAGCATACGAAGAGGAGACACACGGGACCCATGGCCTCGCCTCACAAGACACATCGCTGTGAAAAGTGCGATAAGACATTTTTGACCAGCTATCAACTGGTCGTTCATTTCCGATGCcatactggagaaaaacctTACAAATGCGATCTCTGCGGCAAGGACTTTGTTCAAAAGTCGGGTTTGAGGAAACACATCAGGTGCAAGCGTTGTCCAATGATTGAAGGTGGACctattaacaacaaaaattccCGGAAGTATGCTTGCGAGCAATGTGGAAAAATGTTTCCAGGCCCCTCAGATTTAAAAGCTCATCAACGCACTCACACTGGAGAGAAACCATACCAGTGTCACGTGTGTGAAAAGGGATTCAGCCAACCAGGGAACTTGACTAAACATGTGAGGTTTGTTCACAATAAGGAACAGCGCCCCAAGGAGAAGATCCgagaaaagaaatatttctGCAGTCTGTGCGGAAAAGCTTTCTTATGTCCCAGTAGCTTGGCCATGCACTGCAGAACACACAGCGGTGATAAACCGTACTCGTGTGAACAATGTGGACAAGCGTTTGCTCAGGCGGGGAATCTGAAAAAACACGTCAAGCGCTGGCATGAAAACGGTGGAGAAGGCAAGCAAAGGcgaaagaaatcaaaagggAAAAATGGTAACATTGAATCAACGGATGCCCATGGGCAAATTGAGCCACCTGTAGACGAGTGTAGTACCCAGACCCAAGGTGCTGGCCAACATGAAGGAAACACTGTTCATACAAGTGATACTAACACATCAGTCTCGGCTGCGATTTCGAGCTCTCTCCCGGCCCAGGCAATTCAGGATACACAAAACACATGTACTCCCTTGAATACTCCAAGCCCTCTCTACGCAGCCACAGCCACGCCGCTCAATACAGTGCTCCCAAATACCTCTCATAATGCCACGGTGGCGTCTCAACGAATACCTATTTTGTTTGGCTTCGTTGCGCCGCTAGAAACCAACACGATGCCCACCTCTCAGACCCCCGGAGCCACGTCACGAACCCCATTAGAGCAGAGTGATCACTTGAATCCCACCAACGCCGGGATGGCGATGAATGCCCCGCTGACCGCCCCACTGAGCACTAACCTGGGTTCATTGACTGCTCAAGAACTTCAACAAGTTGTCATATCCAGGATGTTGGCATCTGAAAACACCGACAACGCCTTTGTGCCTCCTAACCTTTCGGGATTTCCAGCTATCTCGCCTCCGCGACCACAGGTTCTTCTACCGCATGTACATTCCCTTCTCACCCCGACAGGGGGAAATTCTGCCGGGGAGGTGACCGTTTGGCCTTTCTCTTCAAATAGTGGCGTGTTCCAGCAGTAA

Transcript

BRAKERNUST00000033462

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G5EBU4	Zinc finger E-box-binding homeobox protein zag-1 OS=Caenorhabditis elegans OX=6239 GN=zag-1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003780 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549 all species →	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan
PF13912 all species →	zf-C2H2_6	C2H2-type zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24379 all species →	KRAB AND ZINC FINGER DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.