Gene detail

Detailed information of BRAKERNUSP00000033950.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_020603407.1, systemic RNA interference defective protein 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000033950

ATGTGGTGTAGTGATGATCAGGAAGATTTCTATGCAGCAGTTTATGAGCATTATTTACCTGTGGTTATTGTGTCTACAGGATTTCTACACCTGTCTGTTTATGGACTGGCTGGTGAGGAGGAGACAAAATTGCAAGGGCATCTGGATGTCTCCAAGTCTCAGTCCGATTGGAGTTCCCTGACCTTGTGTCCTCCCCGTTCTAGAAACGAAATCCAAGATAAAAAGCTGGCATTTTCAGGATATCCGAGCCTTGAGTTCACAGTACAGATAGAAAGTCTTTCAGGAGAAATCAATTTAAATCATCCAGAACAATTTGAGATAAACCAAATGAATCGTAGATCTGTTTTCCAGTTCATCCCACCTGAAAGAATCTCAGAGACACAGCTCGATATCACAGTCACTTCAGACTCGGATGTACCAGCGTATTTGAAAGTGTCGCAAGTCTGCAAGGACGTTGACGAAAACATACAACTTGTAGACTACAAACGAGAGTCAATTCGGCTTTCCTTTGCAAAGAAGGGACGGATCACGCTGTCCAAGGTCTCTGTTCCTCCACTGACCGATTCCAAATCCAGCTGGTTCATTGGCATTGCGCTGAAGAACGGTACAGGTACAACGAAGTATGATGCAAGAAAGACTGGAAATTTAAGTTCAACAAGATCATTTGATTACTCTTATAATCCCATTTTTGTTGTAGTTATATTGACTATTTTGTCGGGTGTGGTAGTGTCAGTCTTCGCGTTTGTATGCTTCAAAGAACTTTTTTATTCACAAAGAGTTAATTGCTGTTGTCGGTGCTGTGGGGGTAGTTGCTGTACTTGTACCTTTGGGCTTTGTTGGAAAGGTTTTTGCGATCACATGTCTCTTTGTCGCGAGGTTGTGTATGACCACTGGTTCACTCGCGGTCCTAAAACCTTTTCCTACACCACAGGTATTGTGGGGTTTGTCTTAATGGTCGGCGCTTCTCAGTTTGTCTTTGCAAACTGGCATGTTATGATTGATGAAGGCGATAGAGACAACTGTTACTACAATGACTTCTGTTACAGAGTAAGCCCTTGGCATGACATTCCCTACAACTTAATGATGAGTAACTTGGTCTACATTTTCCATGGAATCATTTTGGCTGCTTGCGTGTGTTGCATGGAAGCAAACTTGCTTTACCTTTGCAGAAATCTTTCACTTGATGACTTGAAAGGGAAGATTTCGTTTTCCATTGGGTACGCTTTTGCTTGGGCGTTGTTTTTCGAAGggtttttttcgttaatttaCCATCTTTGCCCAAGTAAGATGACTTTTCAGTTCGATACAGCGTTTATGTTTGTCATTTCCGGATTTACCGTTATTTTACTGTACAATGGGATcaaaaaaaatgtattcacTGCAGAGAATGCGAAGGGCCCAGTGGGATCGGCAAACTTTTTCCTCTTTGTCTTAGTtccactttttattttcaattactTCGCCGCGCTTCATCATTTTCAGTTGCATCACTCTGCTGAAGGCATGAACAGTTTTTTTAGAATAGCCTTTTTCATATCTTTAGTGATTTGGTGGATGCATATTATTGTGTGGGCTGGCTACAAACTGTTGCTACCTGCAGTTTTAAATGGCAACAATTCTCAGCGCTTTAAACTGGTActttctattttcttttgcgTGGTTGTGCTCATGCCAATTGGTGTGTTTATTTTCCTCGTACAAAACCTTCCTGAAGCATTTCTGCTTTCCTGCATTGGTGTAAGTTTCCTTGTCGTTTTTGGCAAGGCCGTCTACGCAGGTTGCAAGGGTGACGTAAATTGCAATTGTTCTTCATTCAGTTTGCGATTTGTTTATGTCATCGGGATTGTGGCTTTATGGGCAATTGCCcttcattttttcatttgcaaacCAACCACTAACAAGGTGGAATCCCCTGAGATATCTCGAGATCTAAATCAAGAATGCAAATACATGGATCTTTTTGACTACCACGACATGTGGCACATTCTGTCCTCCCACGCTCTTTTAATGGGGGCTTATTTGCTTATGTTCATGAGCTACGAGCCGCCCACCGCTGTTGAGACCATGAGCTACTACGGATCGCTTAATAGGCTTCCCTGA

Transcript

BRAKERNUST00000033950

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13965	SID-1_RNA_chan	dsRNA-gated channel SID-1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025958	Family	SID1 transmembrane family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12185	SID1 TRANSMEMBRANE FAMILY MEMEBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0050658	Biological Process	RNA transport	Interproscan
GO:0051033	Molecular Function	RNA transmembrane transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26111	SIDT1; SID1 transmembrane family member 1	-	Membrane trafficking	ko04131	deepkoala