Gene detail

Detailed information of BRAKERNUSP00000034212.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029185339.2, LOW QUALITY PROTEIN: putative Polycomb group protein ASXL2 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000034212

ATGAGTTCAGAAAAAGGCGAAACGAAGAGGAAAAAGGGTTTGACATGGGCTGAAGCAGCGAAACAGGTGCTTGAAAGGTCTGTAAACCCTCTCACTCACAAAGACATCCTGAAGGTTATACAGGAAGAAGGTTTACGCGATTTAAGTCGCGGCACGACCCCTCTGGCATGCTTGAATGCTATGCTTCACCACCACTCCCGAGGTCCTAATGATCTATTTATAAAAGTAGAGGGACGAATGAGCTGTTACAGACTCAAtCCAAATCGAATCGAGAGTCCAGGAGAAAACTCCACACCTGACTCTGATTCAGACCCTCCAAGCATGCCTGATGATTCAGAATTCAACCATTTCTTGGACAAGGATGGGTTAAATAGTCAACATCTTAGTAATGGGAAAGTCAAGATGCCCTTGGGTGCCAAAGAGATTGTTATGCCACAGCTTAAGCCACCGCCGCCAAATCCATTCCCTAGAGAACCCCAGTCAAAGCTGCCACTTACCAAGGATGGTAGGCTTCAGAAGAAACGTGGTCCTAAACCAGGACCACGCAACTCCTCGGCAAACAAGAGACCAAGGTTGACTAGTACAAGACCTGTCCCGAAAATGGTTTTGAAAAACCTCAAAGTAGGGACAGGTGACAGTGGTTTTGGATTGAATGGCAAAGATGGAAACCCTAAGCCAAATCGAATCGAGAGTCCAGGAGAAAACTCCACACCTGACTCTGATTCAGACCCTCCAAGCATGCCTGATGATTCGGAATTCAACCATTTCTTGGACAAGGATGGGTTAAATAGTCAACATCTTAGTAATGGGAAAGTCAAGATGCCCTTGGGTGCCAAAGAGATTGTTATGCCACAACTTAAGCCACCGCCGCCCAATCCTTTCCCTAGAGAACCCCAGTCAAAGCTGCCACTTACCAAGGATGGTAGGCTTCAGAAGAAACGTGGTCCTAAACCGGGACCGCGCAACTCCTCAGCAAACAAGAGACCAAGGTTGACTAGTACAAGACCTGTCCCGAAAATGGTTTTGAAAAACCTCAAAGTAGGGACAGGTGACAGTGGTTTTGGATTGAATGGCAAAGATGGAAACCCTAAGGAAAAATCTCCATCTTTCCTTGTCGAACCATCATCCAAACTCATCCTGCCATCAAGTGCATGTGTTGCTGCTGATGCCATTGCTGATCACAGCTTCCCAAGGCTTCCAGGATCAGCTTCTAATGACATGGATGGCAAAGAGAAGCTTGAAAAGTTTTCTGACCTTTGGACCAATTCAAAGCCAAGAAGATACAAGAAAATGAGTGTTGctGCTCAGCTGAAGAGAACCAAAGAGGGACGGATAGATATTTCAACACCAGATTCCATTCTCACTAGTATTCCCCTTCGGTCACTCATTAGCCAGCGGACATTTAACATGCTTCCAGCTCTGTATCAATACCAGCTGGTCACTCTGTTGCCCAAAGTTGACAAGTCTGTGGGCAATGATGGAGGCCTGAGACCGTCTCACACTGCTTTTACCAATGAGTTTTTTGCCAGTGCCTGTCATTCATGGAAGGACCGGCTTCAAGACGGTGATTTTATGACAGATATGCAACAAAGAATGAAACAAGAGGAGGAAAGGCTAGCAAAGCTTGATCCTTGGAAGGCAAAATTCTTTGAACCTGTCTGGGGCAAAAGAAAACTCTCGGAGTCTGATTTCTCGTCTCAAGACTTGGCGCATGCGTATTTTACAGCGCCTCTTTCACCGGCCCCTGCGTTATCACCCAGGAGCTCGCTGCCATCGAGTCAAAAGGATCCTAACCAGAGCAGATCAACGTACAACCCTTCAGGTTCACTATCGGTTCCTCTAAAGAAGCTCCCTTCTCACTGCCTCCCCAAGCGGGTCTCGGAATCGAGGAGATCAGAGGCCGCCAGGCAGCTGAGGGCCAATCCAAACGCTCGGCCTTCTCGGCCGCGCTCCATTCCTATATTTCGAATGGTAACAGTGGCTGTGGCTACAGAGGCGCTCAAAGCCGTTAGAACTTGTGCACCCGATAATATGCTCACGGCTAGCACAGTTTACTCAAGGAAAAGGACGATAAAAATTCCCGAGGCTGCCTCGGATGATTTGGTACCTAAACTGTCATCGGCAGCGCCTGTCTCAAGTGTATCTATACTTAATAATGATTCTGTTGATCTGCGGACACCGGCTACGCTCATTAAAGAGAGACCGCCATCGAGGGCTGCTATGCAAAAGCAGGCAGCCGTCATGGAGAACTTATCATCTCGTCGACCAAGCTCTGGCAGCGGTGCAAAGGGCTTTGCTGCCAGTACGATCACGGCCAAAGGCTTCAGCAGGACCATGCTACTCAAAAGTTGTTCTTGTCGGTTAAAAGCCATGGAAGTATGTAAAAAATGTGGTGCATTCTGCCATGATGACTGTATCAGCGCAGCGCAGCTCTGCAGCGCATGCGTCAACTAA

Transcript

BRAKERNUST00000034212

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V727	Polycomb group protein Asx OS=Drosophila melanogaster OX=7227 GN=Asx PE=1 SV=1
Q8BZ32	Putative Polycomb group protein ASXL2 OS=Mus musculus OX=10090 GN=Asxl2 PE=1 SV=1
Q76L83	Putative Polycomb group protein ASXL2 OS=Homo sapiens OX=9606 GN=ASXL2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005609 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05066 all species →	HARE-HTH	HB1, ASXL, restriction endonuclease HTH domain	Family	Interproscan
PF13919 all species →	ASXH	Asx homology domain	Domain	Interproscan
PF13922 all species →	PHD_3	PHD domain of transcriptional enhancer, Asx	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044867 all species →	Domain	DEUBAD domain	Interproscan
IPR007759 all species →	Domain	ASXL, HARE-HTH domain	Interproscan
IPR024811 all species →	Family	Polycomb protein ASX/ASX-like	Interproscan
IPR028020 all species →	Domain	ASX, DEUBAD domain	Interproscan
IPR026905 all species →	Domain	Protein ASX-like, PHD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13578 all species →	ADDITIONAL SEX COMBS LIKE PROTEIN ASXL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0035517 all species →	Cellular Component	PR-DUB complex	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000034212.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.