Gene detail

Detailed information of BRAKERNUSP00000034847.1 in Montipora cactus

Genomic Location: :...
NR annotation: XP_029186415.2, structural maintenance of chromosomes protein 5-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

BRAKERNUST00000034847

ATGTATAGGAATGAAAATCGCTCAAACTGGAAAATTAATGGTAAAAATACCACAATGAAAGAGgtgcAAGAACTTACGAAAGAACTGAATGTACAGATTGGTAACCTATGCCAATTTCTTCCTCAGgACAAAGTTGCAGAATTTGCAAAGATGTCTCAGCAACAGCTTTTAGAGGCCACAGAGAAAGCGGTTGGTCCACCAGACATGTTTGATGTTCACCAAAAATTAATAGAgttaagaaaacaagaaaaagaacttgAGGTTTCTCTCAGAAACAACAAGGAACACCTAGAGAAGcttgaacagcaaaatgaaCGGCTTGAGCAGGATGTGAAACGGCATCAAGAAAGAGAAAGGCACTTGAAGAAAGTACAAATATTAGAGAAAAAAAGACCTTGGGCAGAATACGAAGGAGCTCGTAAACGGTTTGTGGAAATGAAAACTAAAAAGGATGAGGTTAAGAAGAGACTGGAGGAAGTAAGACGCCAAAATGCCCCCATGCAAAAGCGTCTGGATGAAGTAACAAAGAGAGCCAGAGAACTAGAGGACTCTTCTAGGGAAATGATACAAAGAGGCAATGATGCATTGAAGAAAGCAAAATCCAAAAGTGAACAGATTGAGAAGAAAGGAGATAAGATTGAAGAACTGCAGGGAGAACTGAAAGACCTCAaggaggaagaaaagaaaagacagaaaaaGCTTATTGAGCTTGAGAGGACAATACAGGGTCTACAGGATGAGCTGGATGCACTGCCAGACCCATCTGAACTCCAACCTCGTATTGATGAGCTCAATAGCCAGGCACGACAAAAGAACCGTGAAGCGATGACCATCCAAAATCAGGGTCGTGGGATCAGAGATGACTCTGACCGCTTGAAGGCGCAAGTTCAAGATATCAAAAGCCGAATTGCTCAACTAGAAGATATGAAAAATCGTCGACTGGAGTTCCTACGCAACAAACACCGGGATACTTACAATGCAGTTATGTGGCTGAGGGCAAACCAGCACAAGTTTAGCAGTCCAGTACATGAACCAATACTTCTCCAGGTGGAAAtgaagaaagtgaaagatgcaaaaTTTATTGAGAGCCTGATAAGCCAAAATGATCTCAAAGCTTTTGTCTGCAGCAACAGAGAAGACTTGAAGCTCTTTTTGAATGAGgtgcGTGACAATCAAGGATTAAGAGTCAATGGGGTAGCTCCACCTGACGTGCCTTTGGAAAGCTTTAAACCATCTCGCTCATTGAAGGACATTGGCCGCTGGGGCTTTTATGGTTTTATGAAGGACTTGTTTACTGCACCTGATGATGTCATGTGTTATCTCTGTGAAAATTACCGTCTCCATGATATTCCATTGGGAAATGACTGGACTGAGAAGAATGCAGATAAGGTGATTGATGAGGCTGGTATTAGAATGTTCTACACTCCATCTTCAAAGTACATTGTGAAGAGATCACTTTATGGTAATAAGGAAAGGTCAACATTGGTGAACCACGTCAATGAGGCCAGGTTGTTCAACATTGCTGTTGATacggaaaagaaaaagcaacttGAGGCAGAATTACAGGATGTCAATCAACAAATGCATGAGAAAAGTGAAGAGTACAGGCATTTGAGCGAGCAGGAGAGGGTTTTACAGAAGCAACTAGAAGCAATGAgaaatgaaaagAAAGAGCTGACATCTAAGACACAAAGGAGGAAAACACTAGAGAACAAcctggaaacaaaacaaaagcatctGGAAACAGTTCAGAAGGCAGCTCCAAACTTAGAGGGacaaacagagaaaataaaagagcaGATTATCAGAATCAATCTCCAAAGAGCACAGCTTGCAGTTGAATATAGGGAGTCTGTGCAAGAATGCACCAAAGTAGCCAAGGAAAGGATTATGCAGAGTTTGCAACAAGTGCAAATAACTGTTGAGAAATCCAAGGTGGAGGAAGTGTTCCGTGAAACATCACAGCTGCTCAAAAATCAGGAGGCAGAATATCTGAGAATTAATGACATGGTAGAAGGGCAAAAGAAACTggcaaaaaatttgaaaaaaattgcccaCGAAAAGACTGGCATTCCTGATGGTGCAGATATACCTGATGAGCTTAGGGAGGCATTTAAGCTGTACCCAGATACACTAGAGGAACTTGACGAAATGATTCATGATGAGAAAGCCAGAATAGAATGTCAGTATCAAAGCAATCCACAGGTGGTCAAAGATTATGAGAGGCGCAAGAAAGGGATTAGTGATCTCCGTAAGCAGGTTGAGGGACAAGAGCAAGATTTGGAGAGCAAACAAAACGAAATAACAAGCTGCAAGGAAAGGTGGTTGACACCATTACAAGAATTAGTTACACGAATCAATGAGAAGTATGGCGAGTTCTTCAGATTAATGGGCTGTGCAGGTGAAGTGGCTCTTTCATCGGAACAGGGTGAAAACAACTTCGACAAATATGGCATTCAGATCAAAGTGAAATTTCGTGCAAAAGACAGTCTCCATGTTTTAACACCATTCCATCAGAGTGGTGGGGAGCGCAGTGTGTCGACCATGCTGTATCTGATGGCCCTTCAGGAGCTTACCAAGTGTCCTTTCAGGGTTGTGGATGAGATTAACCAGGGAATGGACCCCAACAATGAGAGAAGAGTGTTTGAACTTGTCGTGGAAACAGCTTGCCGACCAAACACCTCCCAATATTTCCTAATAACTCCAAAGTTGCTGCCTGACCTGACATACACTGAGAAGATGACAATTCTTTGTGTCTTTAATGGACCCCATATGGTGAAACACACAGAATGGAATATTGGAAAGTTTATTGAAAGGAAGAAAGCCTTGCAGATGTGA

Transcript

BRAKERNUST00000034847

Protein

Uniprot

Uniprot term	Description
Q8CG46	Structural maintenance of chromosomes protein 5 OS=Mus musculus OX=10090 GN=Smc5 PE=1 SV=1
Q8IY18	Structural maintenance of chromosomes protein 5 OS=Homo sapiens OX=9606 GN=SMC5 PE=1 SV=2
E7F0W1	Structural maintenance of chromosomes protein 5 OS=Danio rerio OX=7955 GN=smc5 PE=3 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR027131	Family	Structural maintenance of chromosomes protein 5	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45916	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030915	Cellular Component	Smc5-Smc6 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22803	SMC5; structural maintenance of chromosomes protein 5	-	DNA repair and recombination proteins	ko03400	deepkoala