Gene detail

Detailed information of BRAKERNUSP00000035155.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044174437.1, folylpolyglutamate synthase, mitochondrial-like isoform X1 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000035155

ATGGCAGAAGACGGTGATGCTGAAACCGAATTGTTGGACTACGAAGAGGAGGAGACAGAGACCCCAGTGGAAACTCCGGCAGTCAACGAGAAGGGAAAGAAAGATGTAAAGGGAACATACGTCAGTATTCATAGCTCTGGCTTTCGAGATTTTCTATTGAAGCCGGAACTTCTGCGCGCCATTGTCGATTGTGGATTCGAACATCCTTCCGAAGTTCAACATGAGTGCATCCCTCAGGCAATCCTTGGCATGGACATCATCTGTCAAGCTAAGAGTGGCATGGGCAAGACAGCTGTGTTTGTTCTAGCCACCCTTCAACAGCTAGAGCAAATTGATGGTCAAGTCAGTGTGTTGGTCATGTGTCACACACGAGAGTTGGCCTTCCAGATTTCTAAAGAGTATGAGAGGTTTTCTAAATACATGAATAACATCAAAGTTTCAGTGTTTTTTGGTGGCATAAACATCAAGAAGGACCAGCAGACTCTGAAGACAAACTGTCCACACATAGTTGTTGGCACACCAGGCAGAATTTTGGCACTGGCACGTGAAAAGTCACTGAATCTCAAGCATATCAAGCATTTCATCCTTGACGAGTGCGACAAGATGTTAGAACAgcttgATATGCGAAGAGATGTTCAAGAAGTATTCCGCATGACACCCCATGACAAACAAGTTATGATGTTCAGTGCAACCCTGGCCAAAGAGATCCGACCTGTGTGCAAGAAGTTCATGCAAGATCCAATGGAGGTGTATGTTGACGATGAGACGAAGCTAACGCTGCATGGCCTTCAGCAGTATTATTGCAAACTTAAAGACCAGGAGAAGAATAGAAAGCTTTTTGATCTCCTAGATGTGTTAGAGTTCAATCAGGTGATCATCTTTGTCAAGACAGTGCAGCGGTGTAAGGCTCTTGCAGAGCTGCTGGTAGAACAGAACTTCCCTGCCATTTTTATCCACAGGGGAATGAATCAGGAAGATAGGTTATCACATTACAAACAGTTCAAAGatttttcaaagagaatgcTTGTGGCCACCAATCTGTTTGGACGTGGAATGGACATTGAGAGAGTGAATATTGTCTTTAATTATGACATGCCTGATGACTCTGACACCTATCTTCATAGGGTTGCTAGGGCTGGTCGATTTGGAACCAAGGGTTTGGCCATCACATTTGTCTGTGATGAAAAAGATGCAAAAGTTCTAAACGAAGTCCAAGATCGCTTTGAAGTCAATGTTGGGGAACTTCCAGAGGAAATAGATCTCACCTCGTACATTTTGAAATTCCTGCTCTCTTGTCGGTTTCATTCTGTCGTTGAAGTATTGCCAGAAGCTATGAAACAGAGAAGTTATGAGGATGCAGTGAAGAATCTTAACTCTCTTCAAACCAATGCACATGTATTGGCACAAATTCGCCGCAACAAAGACCGGCATGCCTGCAACAATTTGCCCGAAATGAGACGGTTCACGGAACGAGCTGGAGTCAAAaTGGAGGATCTGGACAAACTGTCTATTATTCACATCAGTGGCACAAAGGGAAAAGGCTCTACATGTGCTTTCTGTGAAAGCATATTACGCCACAAAGGCTTCAGGACTGGATTTTATAGCTCACCGCATTTAATGGAAGTCAGAGAAAGGATCAGAGTCAATGGCAAGCCACTGTCCAAAGACAAGTTTGCAAAGTATTTTTTTGACTGCTGGGATAACTTGTGTAATAATGGGCATGAACATGGAAGAGGCAACATGCCAGCATATTTTAGGTTCTTGACACTGATGTCCTTTCACGTTTTCCTACAAGAAAAGGTTGATGTTGCCATTGTAGAAGTTGGAATAGGAGGTGCCTATGATTCCACTAATATAATTAGAAAACCAGTGTGTTGTGGAGTGACATCCCTTGGTATGGACCATCTCAGTACGCTTGGTGGAACGCTGGAGAGTATTGCTTGGCAGAAGGCTGGAATATTTAAGGCTCCACTACATGTTGTTCCATCTTTGGAAAGTTACCCAGGAAAACTACCAGACCTTGGCCTTGAGGGAAATCATCAACACTTGAATGCTTCACTTGCACTTCAGCTGTGCACAACCTGGCTACACAGATCACAGCAAAATGGTGGCAAATCAACAGAGTCCGTGAGTACGATGGAAGCACCAAAAAAAGAGCCCAGTTCAGAAGAACCCCAAGagaaaaaaccaaaacattatGTTCCTGTGGCTGAAACATTTGACATTCATTGCCAAATAAGAAATGGTTTAAGAAATACAAGATGGTGTGGACGAAATCAGGTCATATTGAGACCAAGGGTGACTTTTTATCTGGATGGTGCACACACACCAAAGAGCATGGAGGCCTGTGCACAGTGGTTTAAAAAGAGAGCAgacaaggaaaaagaaaatgagagTGGTGTTGTTGTTCGAGTGTTGCTTTTCAACCTCACTGGTGATCGTGATCCTCACAACCTTCTCAGACCAATTATGAAATGTGACTTTGATTATGCAATCTTCTCACCGAATACAGCTACTGTGGACCCAAAATTGAATGATGCAGACTTGACCAATTTTATGGTAAGTCGGGATAATCAGCTGCAATGGTGTGTGGAAAATCAACGTGTGTGGATTGCTTTAAGGGGAGCAGGATTTCAAGCACATACAAACCCATCGAATAACCTTGCAGATGAGGATTCTACTATAAAAAATGGACAGGATGATGGTCCATATTCTGCAATATTTCCCAGTGTTTCTCAGGCAGTAAGTTGGCTGTTGGCTGGCACAGATCCTCTCATACCTCCACTGTCTGCTGATGGTCATCCATTACCTGATTTCATTTCACAAGCAAAACGAATTCAGGTCTTAATATGTGGAAGTTTGCATCTTGTTGGTGTAGCTATGAAGGTACTGGGTCCTGAAATTGTTGGCGATGTTTAA

Transcript

BRAKERNUST00000035155

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1N5	Spliceosome RNA helicase Ddx39b OS=Mus musculus OX=10090 GN=Ddx39b PE=1 SV=1
Q63413	Spliceosome RNA helicase Ddx39b OS=Rattus norvegicus OX=10116 GN=Ddx39b PE=2 SV=3
Q5WR10	Spliceosome RNA helicase DDX39B OS=Canis lupus familiaris OX=9615 GN=DDX39B PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR018109 all species →	Conserved_site	Folylpolyglutamate synthetase, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001645 all species →	Family	Folylpolyglutamate synthetase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR036565 all species →	Homologous_superfamily	Mur-like, catalytic domain superfamily	Interproscan
IPR036615 all species →	Homologous_superfamily	Mur ligase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11136 all species →	FOLYLPOLYGLUTAMATE SYNTHASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0004326 all species →	Molecular Function	tetrahydrofolylpolyglutamate synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0009396 all species →	Biological Process	folic acid-containing compound biosynthetic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0046901 all species →	Biological Process	tetrahydrofolylpolyglutamate biosynthetic process	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0016881 all species →	Molecular Function	acid-amino acid ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000035155.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.