Gene detail

Detailed information of BRAKERNUSP00000035906.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_029213250.2, ribonuclease 3-like [Acropora millepora]
Species abbreviation MCACT · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000035906

ATGGTAAGGGGTGAAGGAATGCCATCATTTCAACAGTTTGCATCTCCTCCAGTATTGCCCAGTCCATCCAACCCACTTCCATTTCACCAGGTCTCACCCAGAGGTCCACAGATATCGCCACATCCCAACCAGCTTGCAACCAGACCACTAATGCATCAGCCTCCTCCCAAATTAGTGCCATCTCCAGTGGCACAGAACCCAGGTTTCTGCAGCCCTCTATTGCAAAATGCCCAACCTTTTAACCCTTCTTGTGGTGTGATGCCTCAGCAGTCAAGAATGGTGTACACTAGACCTTCTTCCAGTGGATTAGTGGCACCAACACAAAGACCATCAACGCAGACGCATTACCCCACCCATGGGGGGATCTTGGTAGCGCCAAGTCAGCCAATAGTGCCATATAGTATGCCATCCTGTACAGTTGGTGTTTTATCATCATCCCAACAGCAAGCAATTCCATCTAATGTTCCTGTGCCAGGAGGGATTATAAGACCTCAGCAACCAAGCACATCCTGGGTTGTACCATATGATACAAAGCATCTGACACCACCAGAAAGAGCACTCAATCCTTGTGCCACCCCTTTCTCACCACATGTTCAAATTCCATTCTCATCCCAAGGACACTTTTCCTCTCCAACTGTGCATCCATCTAATGGTGTCCCATCATCTCAAAGGCAAATTACTCCTCTAAATGTGTATCCTCCTGGTGAGGTGCGATCCTCAATCTTACCCCCAAGACCATTTACACCATCTACTGTACAACCCGCCAAAGGGATCAACTCCTCAGCCATACCTCTAAGACCATTTGTATCATCTGCCATGCCACCTTCTGGTGGATTCCGTATTCCAAGACCAATTACACCAACTGCTATGTCACCTAGTGTAGGTATCCATTCCTCACACTTAACTCCAAGACCAACAATTACATCATCTATTGCACAACCCCCCAATGCTATACAACCACCAACCTTATCCCAAAGACCCTTTACACCATCTACTGCACAACACCCTGGTAGGATTCCTGCTCCAATCTTGTCTGCAAGACCATTAGTATCATCCACTGTACCTGCCACTAGAAGCATCAGCTCACCAAACTTACACCCAACACTATTTGCACAATCTACTACTCCTGCCACAGGAGTGGCCCACTCACAAAACGCACCTCCAAGACCATTTGAACCATGTACTTTACCATTCCATGGCAAGATTCAATCTTCACCTCCAGTCAAGATGAGGCTTACAGCTCCTACCTCACCACTCCCTGGAAGATTCCCTCCAAGTGGAAACTTGTCACCTCCTCAACAACCCTTTGGACAAGCAACCTTTCCCTTGCCAAGAGGTGTGTTGCCTCCCAGACTACCATCCTCTACCATAAACACAGCCTCACCTCAACAACTTACATCATCTCAGCAACTAACAGCTTCAAATAATTTACCTGCTTCCGCTGGAATTACATCTCCTATACATCAGACATCATGGCACGGTCCTCGGCCCTTGAATCCCAGAAGCATTCCATCTCCTACTTGGCAGCCGCCTCCTTTAAGTAGCTCACAGCTACATCTCCAGAATCCTCAATCCTTTGGACAAGGATCCACCAGTCCTGTTCAACAAAATAGAGCCAGCAGGCCTATGCAGCATGTAAAGGAAGCAGTTGTTGTGCCTGGTCAGGGAAAAACATTATGCCGACCACAGTTACCTGTCAATAAACAGATCAGCCCCATTGGTCAGTCAGCTATCCCTAAATCACAAGTTCCAGCAAACCCATACACAAGGGCAAGTCGGTCTAAACACAGTAAACAAGGTGAAAGAAGAAGAGATCTTGGTAACAGAAGTGTTCAAAGGAATCAATCCAGCAGACCCAGAGTTTCCCGTTGTTTTTCCCCACCACCTCCCAACATAAAGAGAGTAGTAAAGTTCACAACTTCAGAGGAGTATTACACTAAGAAGAAGGATGACCAGgaaaataagtGCCACCTTCAGGGAACAGAGAAACTAATTGAATTGCATGTTACGTTTGAGAAGGAAATAATAAACATGGTATCCCTTGAACAAGGTGATAATGATGTTGAAAGTGTCAGCAGTAAGGAAAGTCGCTACAAACACACGGATGACAGTGACATGGAATCACTGGTTGAAAGTGATAGCGAAGAAAGCTCAGTAAAGTCAAGGCTACAACTGTTTCCTAGCGATGATGAAGGAACCAGCGATGGAGATAGCAGCGGCATTGGAAGCCATGCTTTGAGTGACAGCAATTTTGACAgtgataacaatgatgatgatgatgaggatgatgacaatgatgttgatgatgatgatagtaatGCAGGGGGTGGGTTGTCCGATGACGAACTTGACAATGCTGGAAATGAGGAAAATTGCCATAAGGGTCCTAGTGTGGCAGAGATCAGGAAAAGGAAGATAGAAGATCCCAGACGCCTTCATCCTGAACTCTGGTTCAATGAGCTGGGGGAGACAAATGATGGCCCAGTGTGCCGATGCAGTTCTGCTGACAAAGGACAAGGAATACGCCATGGCATTTATCCTGGTGAAAGTGCAATCACACCTTGTGATCGTTTGACAAACAATAGTGCCAAAATTCATCATTACTGGATCACTGTCACACCACACACAAATTTCATGACCTCTAATCCAAGTGTCATTCATGCTGACGGAAAAGATTTCACTTTTGAAGGCTTCTCACTGTTCTCTCATCACCCACTGGAGGAAGTGCCCCTTTGCTCTGTGATTCGATTCAACATCGAATATACACTTCATGTTGTCAGTCAGCCAGTACCAGAGGAAATATCAAAGATTCCTGTCAGCGTTACCACTTCATGCCTAGATTTATACATAGATCAACTGTTGAAGCAGCTTGATCTTAGCAAGATTGAAAAGTGGCAAGAGTATGTCAAGTCATGTAGGAATGCCATTGTCATGAACCCAGCTAAGAAGCCTGCAGCTCTTCGCGTTGATGACATGCAATTCTGTAAGGAAAAACATAGATCTTGTAAAAGCAAGGTTTACCCAGATATTATCCATCACAGTATCAGACCGGTTCAGATGAGCTTTGCAGGAGACGCAAAGCCTATACCAAGTCGTAAGAATCAGGACAAGCTTGTAAAGCTAAAGattGAATTGGAAAAGATGCGTCTAACGAGCTCCATGCGTCGTGATGTGTTGGTGGAAGTGGGTAGTAAAGGCATGATCAAAACGGGTTTAAAATCAGACATGTGTCAGCACGCCCTGCTACTTCCTGTGTTAGTTCACCACCTTCGCTATCACGCGTGTTTACACTCTCTTGACAAGAAAATAGGCTATGAGTTCAAAGATCGGAGCTTACTTCAGCTGGCTCTGACTCATCCGTCCTATTACCTCAACTTTGGCATGAACCCAGATCACGCGCGGAACTCTCTTTCAAACTGCGGAGTTAAAAAACCTCGATATGGAGACAGGAAGGTGCGACAATTACACACGCGCAAAAAGGGTATCACTCAGCTGATACGGGTCATGTCTAACCTcggaaaaatggaagaaaaccaGTCCATGATACGTCATAATGAGCGACTGGAATTTCTCGGAGATTCTGTCTTGGAGTTAATATGCAGTGCTCACCTATATTTCATGCTGCCGTACAAGCCTGAGGGAGGTCTTGCCATGTACCGCTCAGCTCTTGTACAAAACAAGCACTTGGCTCAACTGGCCCAGAAATTAGGCTTGTCGGATTATATGCAGTACTCACACGGGCCTGATTTGTGTTTGGAAGAAGATCTCAACCATGCGATGGCTAATTGTTTTGAAGCTCTTCTAGGGGCAATATACCTTGAAAGTGGATTAAAGCCAGCCACACAACTTTTCACTCAACTTGCTTTTGACGAGGAGGAACTAAGAGAAGTCTGGACGAACTTACCCAAGCATCCTTTGCAGAAATTACAGGAGTTTGAGCAAGTGAGTGGAATCGAGTTCACGCACATTCGCTTGTTAGCACGTGCCTTCACTCATGCACAAGTTGGCTACAACAACCTGACTCTCGGTAGTAACCAGCGCATGGAATTCCTTGGAGACTCTGTGCTCCAATTTGTCGTCTCCGTTTACCTCTATAAGCATTTTTCTGAACATCACGAAGGACACCTTACGCTGTTGCGGAGTTCTCTCGTCAATCATCGAGTCCAGGCAAAAATTTCAAGGGAGCTGGGTCTTGATAAGCTCATTAACTTCGGAGGACAGGCTGAAATGAAGGGTTTTCGTGAGAAACTTCTTGCTGACGTATTGGAAGctttcgTTGCTGCTTTATACGTGGACAAAGGTCTCAGACATGTGGAAGTATTTTGCCGCGTTTGTCTCTTCCCTCGCCTAGAGGAGTTCATTATCAATCAGGACTGGATGGACGCCAAGTCGCAGTTACAGCAGTGTTGTCTGACGTCACGTGATCAGGGAAAAACACCTGATCTGCCACAATACAAGGGTGGAGTGGGTGTGAATTCTCAGCTCAAGTCCCTTTGTAATGTAGTTCTCTCTCCAACAGTTGCTGTTTACCTCAAGAATAGACGACTTGGTTCTGGTGAGGGGAAGAGCATTCAGCAAGCAGAAATGGCAGCTGCAAAAGACGCTTTGGCCTCTCACTATTTTCCAGAATTGGCGCGACAGAAGCGTCTTCTCGATAGAAAACATCAAGGACGGCGGCGAAATTACTGGAACAAGGTTCCACGCAGAGAATCTGAAAAGCAATATAACAAAGATGAGGAATTTACTCCACAGTGGGAGGAAATGGAAACTTTCGAAACACAACAGAGCAATCGGGAAGAGAAAGGACGGGACGCTCTGGAAGAGCAAGCCGAGAAGATTTGGGATGCTTCCGAAAACTGGGAGCCGGGAAAAAATGATAATAGCGAGAGTTGGGAAGAGGAGTCGAATGGCTGGAAGGAAAATTGGGAAGACAAAGAGGTTGAAACGACAGGGAATTCGGAGGGAAAAGAGGGGACCGGGAGGGAAAAttgggaaaatgaaaaattggaGGAAGAGCAGGTCCGTCATGGAGAAATATGGAATACGGAAAATCGTAAGATGACGGAAACTGGCAAAGAAGAAAAGTGCGTTGACAGAGAAAACTGGCAAGGTGACTTAAACGATGCAAAAGAAAACTGGGAGGAGGAAGGGATAACTATGATTGAAATAAGTGACGGGGAAGAGAAGACTGGAAGGGAAAATTGGGAAAATGAAGTAACAGTGCTAAAAGAAAACTGGGAAGAGGAGCTGATTGATGAAATACAAAACTAG

Transcript

BRAKERNUST00000035906

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5HZJ0	Ribonuclease 3 OS=Mus musculus OX=10090 GN=Drosha PE=1 SV=1
Q9NRR4	Ribonuclease 3 OS=Homo sapiens OX=9606 GN=DROSHA PE=1 SV=2
Q61XX9	Ribonuclease 3 OS=Caenorhabditis briggsae OX=6238 GN=drsh-1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14622 all species →	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR011907 all species →	Family	Ribonuclease III	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11207 all species →	RIBONUCLEASE III	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031053 all species →	Biological Process	primary miRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0070877 all species →	Cellular Component	microprocessor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03685	rnc, DROSHA, RNT1; ribonuclease III	EC:3.1.26.3	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.