Gene detail

Detailed information of BRAKERNUSP00000035987.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044175884.1, hamartin-like isoform X2 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000035987

ATGACCTCGGCTACGGAGACCTCGTCTGCATCGAATCAGAGAGACTTGTTTTGCCTGCTGGACGCAGATAACATAAAGACAGTAGAGGAGACTAAAGCCTTGATACACGAAAATCTTCATTCTTCTCGCGATCCTGGATTGCTGCATGCCATGGTGGAGTATTATTTAAAAACACGCTCGCCAGCATGTCTGCAGATATTAAGTGGAATCCATGAGGCTCGCGCACAGGCACTTTTTGAGAAAATGAACGATTCACTTAAACACAGGACAACTCGTTTGGTCACTTTGACACTTCTGGGACATATTGTTCGCAAACAGCCATCTTGGTTACACAAGATCATCAAGACACCGCTCTTTGATACTTTGCTTAAGTGTTTGAAGGTTGACACCGATGCTGTAGTTTTAGAAAGTGCTGTGTTAATTATTACCACCATGTTACCCATGGTTCCAGTCTCCATTGGTCCTTGGCTCCCGGAATTGTTTGAGATATTCATCAGGTTGTCATCATATAGAGCACATGGTCAAGGTAATGCACCTGAAGTGTATCTCCTTCACTTACATGTTGCAGTGTACATGTTTTTCCACCGACTTTATGCAATGTACCCAAACAACTTCTTGATGTACCTCAGAACTCTAAATAATGAACCATCCAAAAAAGGCATTTTTCAAGACTACGTCAAACCCATGCTGGAGTATGTGCGAGTGCATCCTTGTGTCATCACAGAGACAGCACAAACAGAGACTGATAAACACAGGTGGAAACAGAAAGAGGCACACGACATTGTCATAGAATGCATGAAAGTCTCTTTAGATCCTATTGACAGAATACAAGAAAAGGGAAATTTCCTGTCTTCATCAATGCACAAGCATAGCTGTCAAGAACTGTTTGCTGATAAATCTATTACTTCTATCCTTACTGCATCGTGCGATAGTGAAGGACTGGGGTTGGAAAAGATAAAGGAGCGCCGAATGTCTGATTCAGCCACACAGACTGGCAAATCCTTGCAAAGCGGTGACAGTGGCACTGATTCCTGTAGTTTGCCTGTGGTTTCTTCAACTGAGATTGCGTCAGGGTGGAGTACATCGGGATTGTGTCAGTTGAACACTCCACCTTCCTCACGGATGTCTCCCTCAACAAGTAATCCTGATTTGACATCATCACTCACATGTAATATTCATTCCCACTGCAGTACACCAGCTGGTGTGTATACCCCAGGACAGTCCCCCACAGCATCATTGGAAGGTGATGTAGCATATCCACCAAGCTACTCCAGTTCGCCGTCTATTTCAGGGAGTAGAGGAAAGATTGGATCAATTGCAGGAATTTATAATGACCGAGCATCCTTACTCAAGGGTAGCAAGGCAGCTGCTAGTCAGGAAGGGCAGCTAGCAAGAGCCCTGTTCTCTGCACTGACCTTGCAAAGTCAGCAAAATCACAAGTCAGCTCCTGCTGCCATTATGGAACACCAGTCATCAACACCAAACAAATGTCAGGAAGATGGAAAAATTGAAAGGGCCGTGGAAACAAGCCACGAAATGAGCAATGTCTCGCACACAAGTTCTATAATGAGTTTTGAAGCCCATGGTGAAGAAACGAAGGGTAGCGTTCAGACAACTAGTTCGGAAAAATTTGACAGTGGTACTTTTAATGTACTGCCAAAAGAGGAATTTAGAGACTCAAGTGAGGAAGGGGATTATCCACTGGAAGTGAATCAGTTTAAGCCTCAGGATGCCAGATCTGTTGAGACAAATGCAGGTTTTTTGTCTGGACCTCTGACAGCAATGGCTGGTCAAACTCTAGATGCTGGAACATCTCCAAACTTGGCTGATGAATATAAACTGTTACCAGAAAATACTTGTTCAAGCAAAGAGATCAATGTATCCCATGAAGTAATGGTGCAATCTTGTTGTGAAAATGATGGCTTGATTAGTAGCACCCAACTTGAAGATGAGCTAGGTAGTACGATAAGTTTGGACAAAGGCCAATGTCATTCAGAGGCTAGTAAAAAGGAAACTAGTGTAGCATCCTCAGATGCATCATGTGACTTGTCCAAATGTCAAGCGACAATTCCTGCTTCACAGCTGAACCATCATGGCTTTGTTACTAGTGACGTTTTTGCTGGTTTTCCTCAGCTGCTTCGTTGGATAAGAGGTGAGCTGGATTGTAGCAACTTCAATGCAGAAAGTGATGAACCAAGCTTCTCCAGACCGCAGTTCAGTGCAATGTCATGCAGGGCTAGCCCGGTAGAAATCCTTGATAACTACCTCAAGACAGGAAGCAGCATACACCATGGTGAACTTTCAAGAGTCCCTCTTGTTAGCCAAGCCGGGACATGCTGGACACACTTTGGAGGTAAACCTCCAGTTGATGAAGTTGAGATTCTGAGAGGACAAGTCAAATTATTGCACAACCAGTTATTGTTTGAGCGACACAAGTGTGATCTGCATGCCATCCGTAACAGAAGACTCATTGGAAAGACTTTCAAAGCCGTGCAGTATCAGGAAGAATTACAAGCCACTAAAGACCAACTGAGGCTTCAGGAGGACAAGATGAGAGAATTGACTGAGGCACTCAACCAACAAATGGAAGAGAGCAGGAAATACAAATCCCTTACTTCAGGTTGGGAAAACCACCAAAGGATTGAACTTCAGAATTTGTTAAATGAGAATGCCCAATTGAAGTACAAAGAAAAGGAACTCCTTGAGAAGTTTGAAACTCAACAAAGGGATTATGATTCAAAACATGTGGAAGTGCATCAGTTGAAAGCAAAAATCTTCACATTAGAAAACGAGTTAGAGCGACTTAAAGTTGAGTCATCAGAAAAAGATCACCTGACCAAACAGGTAAATCACCTTGTCAAAGAGGTACTTTTGTTGGGTGAAATAAATCAACAACACAAAGACACTATAAAAAAATTGAGACTCACAGAAGCTCAACACCCTGAAAGCTCGATGCACTTAAAAACCTGCCACAGAGAATTAACAGTTGCTAAGCAAACAGTGAAATGGCAGAAGGCTGAATTAGAGGCATTGACTTCCAAACTAGCTGATGTGGAGACAGTGGTTTCCAACAAGGATAATGAAATTAGAGATATGAAAAAGTTCATAGAGGGATTAAAAGGAACATGTATTGGGAAGATACAGAGCCTAGAAGAAAAATACAATGCACAGAAGAAAGTAACACAAGCACTAGAGTCATATATTCTAGATGTGCAGGCTGTTGAAAGTGCAAGAAAGGAGAAGATTGCAAGTGAAAAGTTGCAACCAGAATCTTAG

Transcript

BRAKERNUST00000035987

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z136	Hamartin OS=Rattus norvegicus OX=10116 GN=Tsc1 PE=1 SV=1
Q9EP53	Hamartin OS=Mus musculus OX=10090 GN=Tsc1 PE=1 SV=1
Q92574	Hamartin OS=Homo sapiens OX=9606 GN=TSC1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04388 all species →	Hamartin	Hamartin protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007483 all species →	Family	Hamartin	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15154 all species →	HAMARTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0032007 all species →	Biological Process	negative regulation of TOR signaling	Interproscan
GO:0033596 all species →	Cellular Component	TSC1-TSC2 complex	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07206	TSC1; tuberous sclerosis 1	-	Human papillomavirus infection	ko05165	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.