Gene detail

Detailed information of BRAKERNUSP00000037283.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044181131.1, muscle M-line assembly protein unc-89-like isoform X1 [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000037283

ATGATGACTGGACAGTTGTCCCACAAGGGGGACATCCTCACAGTAAATGGAAACATTGATGtgcTAGTAAAGTTTTATTTAGTGCAAAGCTTTTGCAAGATCTTCCCTGGGGACAGAAATGTGGGCGGCACTGCAACATTTGACGGAAATCTGGTTCTCAACTGCTCAGCGAAGTCCAAGTTTCATGGCCTTCGTTTCGATTCTGTTAACTGGACCCGAAATAAAAAGCCAGTTACTGAAAAAGATCAAGTACGACAAAATTCAATCAAAACGTGGTCGGCAGTATTCCTCACGAATGTAACCATTGATCAAGAAACTTTCCAGTGTTTCGTGGCACGCGGAGAGGACATTGATTCTTGTGACGTCACTCCAAGTAGACCGATTCTTAAGATGATTCAATACCACAAAGTCGTTACCGAGAGAGATTGGATGGAGATAGGGGTGTGCATTGCAGAAAGAGGATGGCCAAACCCTTCTATTTCCTGGTGGAGAAATGGCTCAAGGATTCGCGATGGAGATAATCATCATAGCTACAGTATTAAGCATAAATCGACAGGAGTATTGAGCTTGAAAATTCGTTATATTCAAGGTTACCATCAGGGGACGTACACATGCCgagttgaaaacatttttggaaCCTCCACAGAAGATATTAATGTCATAGTTAAACGTTTAGACATGATCAAGTGGCGttctgttttcaaaaacacaattttagctGTAGAAGGCAAAAGTGCCCTTCTGGAATGTTTCTGCAGCGAAGATGAATGCAAAGAAGCGAAAGCCCGGCCTTATTGGAAATATAACAACGACAACGTTCGCAATTCCAGTAGAGTAAAGTTTGGTCATACGATTACAGAAAATTATGTTAGAATTTCTTTGACAATACGCAACGTCTCGCAGATGGACGGAGGAAAGTATATTTGTGGCATCAACACATCTAAGGGTTTTGACGAGAAAACAAGATCCGTGAAAGTCTTGATAAAAGataattttccacGAGTCGTGACGACTAAAAAGAAGGTTATTGCGGGCCTTAAGTCATTAGCACTGTTCCAATGCAGAGCCATATTTCCTGAGGTATTACCCCACCCACCTAAAACATTTTGGATGTTTAACGATACCTTGATCGGAAAAGCCGGCTCACTGCGTTACGGGCTGAAAGAgtacaacaaaatgaaattttcaaACTCAACTGTTGTGTTGCGTTTTGATCTAACCATCTTCAACGTCAGCTTAGACGATTATGGCCAGTATATCTGTGGTGCAGAGTTTATAAATGGTGAAGAGAAAATCAAGTCTGTTACTAGCCTAACTCTAgtcgaagaagaagagaaaaaactCAAAGACAATGAACAACACAAAGGGCCAATTGGGAGTGGACACGAGACGACTCCGCTGGTCGCCATTTCCTCAATAACCGCTGGCGGAATCATCATGGGCTTCGTTGTTGCCTTTTTTGCTTACAGAATGTGCCGTAGCAAAAGAAACACTGACGAACCATTTTTCGAAACCTCAGTGGATGGCCATCATCAGTTTCGCTATGATGTATTTGTCACCTTCAGCAGCCATGACTTGAACTGGGTCAAGAAGGAGCTTATACCATTGGTGGAGAAACACAAACTCAACTACTGCATGCACGACAGAGACTTTGAGATCGGTAAGCCTGTGGTCGACAACATGGCTCAAAGTGTGTACACCAGTCGTAAGGTTCTGGCAGTGATGTCACAAAACTACTTGTCAAGCAAGTTTTGCCGAGGGGAATTGGAGATGGCCTTGTACCGAAGCACAGAGATGGGTGACTCGTCGGTGATCGTAATGCGAATTGACGGCGTTGATCGCAGCAAACTGCCGAAGGCTCTGCGAAACAGAACCTTCTTGGACTACAATGATTTCACTGAGAGAAAAAACTGGGAGGAGAGGTTGATTAAACATCTTAAGCCACCAACGTTGCATAAGTGCTCAAAGGCGAGTTCCGAAAAGTCGTACACTTTATTGAAGAACGTTGAAGTGTGA

Transcript

BRAKERNUST00000037283

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6R5N8	Toll-like receptor 13 OS=Mus musculus OX=10090 GN=Tlr13 PE=1 SV=1
Q68Y56	Toll-like receptor 4 OS=Sus scrofa OX=9823 GN=TLR4 PE=2 SV=1
Q9GL65	Toll-like receptor 4 OS=Bos taurus OX=9913 GN=TLR4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR015621 all species →	Family	Interleukin-1 receptor family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11890 all species →	INTERLEUKIN-1 RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for BRAKERNUSP00000037283.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.