Gene detail

Detailed information of BRAKERNUSP00000041379.1 in Montipora cactus

Genomic Location: not available for this species
NR annotation: XP_044181449.1, E3 ubiquitin-protein ligase SHPRH-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families

Sequence

CDS

BRAKERNUST00000041379

ATGGGAACTGGATTGCCATCATCACGGAATCCTCTTACGGAATTGATCTTTGTCCTCTTTTCCCATGTGCCACCATCAGCAAGGAAGGAGGTAGTCCCATCTAGGGCAACCCTGATCATCTCTCCAGCACCCATTGCTCAACAATGGATAGATGAAATCAGTAGGCACACCAAATCATCATCTCTTAAACTTCTGGTCTATAAAGGTGTTGCAAAGTCAGGCTTTATTTTGCCTGAGGTCCTTGCAGATCATGATGTTATCTTGACAACTTATACCACCCTTAGATCAGATTTTTATCATTTGGGACAAGAAAATGTTGTAGAACGATCTATGCGATACAACAAGCGTTACATTGCATTGCCAAGTCCATTAACAGGTGTCCTGTTTTGGCGAATTTGTCTGGATGAGGCTCAAATGGTAGAAAGTACCACAGCTAAGGCAGCAGAAGTAGCTGTCCACTTGAGAAGTGTTCACCGGTGGTGTGTCACAGGGACACCAATTCAAAGAGATTTGTCAGATATTTATGGTTTGTTGCTTTTTCTTGATGTGGATCCTTACTGCAACCAAACATGGTGGAAGACTTTGCTGTATGAGCCATACATACAAGGAAACAGTCAACCATTATGTAATTTCCTTGCCAAAATTATGTGGAGAAGTGCAAAAAGAGATGTCATTCATGAGATTCGATTGCCAGACCAGGATGAAAAAGTGAAGTGGCTGATTTTTTCCCCCGTTGAGCAGCATTTTTATCGCCGTCAACATGAGGAGTGTGCTGGATTTGCTATGAGGCTTCTGAGTCACTGGAAGAAGACAGACACCATGTTGAGCACTATAGACAGACACACAGTAAACCAGTTGCTGAACCCCTTGTTACGGTTGCGGCAGGCATGTTGCCACCCACAGGCTGTGAGAGGAGGGTTTCTATCCATGCAGAAGAGtactcTAACAATGGACAAGTTGTTGGAGAATTTAATTTCCAAAGCAAAGCTGGAATGTGAAGAGGCACACAGACAACTCTTGTTTGCTTTCAATGGCCTTGCAGGAATTCACATTTTGAAGCAAGAGTGGTCAGATGCAGTTGACATGTACAGGGAAGCCATGAGATCTTGGATGGAGCATGAAACTACATTTAGAACTGATGCACTACAAAAACTGCACACATTATATAACCTGTCAGATATCCTCAGTGAGCATCAAGAAAAGTGTTCAAGGACGCTAAGAGACGATAAATTGCAAGATGAGGTTAGGGAACTAAGAGGAAATTACACAAACCGTGTCAATGTACAAGTAGCTGCAGCAGAGGAAAACTTGAATGTTGTAAAGTCTAGTATTGCTGATATGAGAAAGAAAATTGATTTCCAGTCACCATGGTGGATGGAAGCTCTACATTATGTTTCAAAGAGAGGATTATGGGAAGATCTGTGTCACAGAATCAGAGATGAATTGTCAGCTACAGATGTCGAAATGGGTTCAATTGGCAGATTTGCTGATCTTCATGGATTGCAGTACCTTCTATCTTCAAAGATAGACTTGATTAAGAATTTGCAAGTTGCCCTGGATGAACTTAATGTCATGCCATCAACGCAAATGGTGCAAGCCAGTGCTGAATGTTGCCTGAGGCCTGCAAATAACAGTCATGCAAAGAGGTGTGCATTTTGTGAAGTGGATGATATTTTCACTGAATATGAGTCACGTATATTTGGTCACCAAGGAATGAAAGGAGTCTCTGAGGAAGTCTTGCAGGCTGATGAGGCCCTTGATTGGCATCGCCATGGTAACACAAGGGGGCTAAGAGCTGAATCTGACTTGGAAAAAGTTCTTAAGGTTATACACAATTACATAAAAAACAACAAAATTTCCCCGGTTGCTCAACAAGAAGGTCGACACCATTTGAACCTGATTGAAGGTCTGAGAAAAGAATTTAAGGTTCTGCGTGCTTTATGGTTTGCTCTTCGTGAGCGTGTTTCGTGCTTCGATGAGCTGGACATGTGCACTTCCCGCCTCAGGCTCCAGCTGCCAGGCGAGCCTTTCTCAGATGACATCCATGTCATTAATCCTCTTCAGCTTGACCAACAGCGCCTTAAGTTCACATCTGACAGAGTTGTTGCCCAAACAGaactgaggaaaaaaattgGCCAGCTTCTTTACCTCAATAACTTGGCAAAGACACAAACCTGTCACGATGGCAAGAATCCAGACCCATGCCCCGTGTGTGTCAAACAACTTGGAGTACAGGCTGGAATTGGTCCCCGGCAAAGAAACGTACACGTGAAGTGCCCTTTGTGTCGAATACCTACTGTTGCACAAGAAATATCTTACGTCAGTACAGCTACGTCACAAACAGATAAAGCACACGACAGTGTCACTGTCAAGGGAAGCCATTCAACAAAAGTAGAGGCGATCGTCCGCACGTTGTTAACCATTAGGTCTGCCGACAGTACAGCCAAGTCTCTAGTGTTCTCTACGTGGCAGGACGTGTTAGCTGTTATAGCAAGAGCTTTAgatgaaaatgacatcaaataCAGGCACATCACCGGTGGAAACCGGCATTTCCAAgAAAATCTGCAGACTTTTAAGCACGATCCAGACATGGGTGTACTTCTGTTGCCACTACAGACAGGCTCAAACGGACTTAACATCATTGAAGCCACTCACGTGTTGTTAGTGGAACCCGCTCTTAATCCCGCTCACGAACTTCAGGCTGTCGGCCGCGTGCATCGAATCGGTCAAACGAGGCCCACTCACGTGTACCGTTTTATCATCCGGGGAACCGTGGAGTCGCGAATGTATTCCTTGCTTCAGTCCAAGCCAACTAGTTGCGTTAGGACTGGAGCACGTGATAGCGAGAACTCCAGTCTAACGCTTGGTGACCTCGCCTCCCTCTTTACCCAAGACGATGAAAAAGACGACGAGCAATTCACGACGGGAATATTTGGCCCAGATTGCGACGAGGTATCTCCTGAACAGGATTGA

Transcript

BRAKERNUST00000041379

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q149N8	E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens OX=9606 GN=SHPRH PE=1 SV=2
Q7TPQ3	E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1
Q9UTL9	Uncharacterized ATP-dependent helicase C144.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC144.05 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003108 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21324 all species →	SHPRH_helical-2nd	E3 ubiquitin-protein ligase SHPRH, second helical domain	Domain	Interproscan
PF21325 all species →	SHPRH_helical-1st	E3 ubiquitin-protein ligase SHPRH, first helical domain	Domain	Interproscan
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048695 all species →	Domain	E3 ubiquitin-protein ligase SHPRH, second helical domain	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR048686 all species →	Domain	E3 ubiquitin-protein ligase SHPRH, first helical domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052583 all species →	Family	ATP-dependent Helicase/E3 Ubiquitin Ligase	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45865 all species →	E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15710	SHPRH; E3 ubiquitin-protein ligase SHPRH	EC:5.6.2.- EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.