Detailed information of BRAKERNUSP00000041976.1 in Montipora cactus

Genomic Location: BLFO01003813.1:1464482...1468037
NR annotation: XP_029185916.2, 5-aminolevulinate synthase, nonspecific, mitochondrial-like [Acropora millepora]
Species Montipora cactus · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P430915-aminolevulinate synthase, non-specific, mitochondrial OS=Opsanus tau OX=8068 GN=alas1 PE=2 SV=1
Q8VC195-aminolevulinate synthase, non-specific, mitochondrial OS=Mus musculus OX=10090 GN=Alas1 PE=1 SV=2
P131965-aminolevulinate synthase, non-specific, mitochondrial OS=Homo sapiens OX=9606 GN=ALAS1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004074 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00155
all species →		Aminotran_1_2Aminotransferase class I and IIDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015422
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR004839
all species →		DomainAminotransferase, class I/classIIInterproscan
IPR001917
all species →		Binding_siteAminotransferase, class-II, pyridoxal-phosphate binding siteInterproscan
IPR015421
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR010961
all species →		DomainTetrapyrrole biosynthesis, 5-aminolevulinic acid synthaseInterproscan
IPR015424
all species →		Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR050087
all species →		Family8-amino-7-oxononanoate synthase class-IIInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13693
all species →		CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009058
all species →		Biological Processbiosynthetic processInterproscan
GO:0030170
all species →		Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan
GO:0003870
all species →		Molecular Function5-aminolevulinate synthase activityInterproscan
GO:0033014
all species →		Biological Processtetrapyrrole biosynthetic processInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006783
all species →		Biological Processheme biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00643E2.3.1.37, ALAS; 5-aminolevulinate synthaseEC:2.3.1.37
Amino acid related enzymesko01007deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora cactus tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora cactus, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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